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The map label for this gene is cycH [H]

Identifier: 93006564

GI number: 93006564

Start: 2154049

End: 2155329

Strand: Reverse

Name: cycH [H]

Synonym: Pcryo_1740

Alternate gene names: 93006564

Gene position: 2155329-2154049 (Counterclockwise)

Preceding gene: 93006565

Following gene: 93006563

Centisome position: 70.44

GC content: 46.45

Gene sequence:

>1281_bases
ATGACCCTATTTTCTACTTTTGGCTTATTTATTGCCCTAAGCTTACTGATTGCACTCGTACTGGCAGTGATCGTTATCAC
ACCTTGGCTAAGAGCTTCAAGGTTACGAGAAAATCCTGTTGACAATCAGCTACTAGACATCAATATCGGTGTATTTCGTG
AGCGTTTGACAGAATTACAATCAGACAAAGACAACGGCACAATTGATGACGCCCATTATCAAAATCAAAAGATCGAGCTT
GAGCGTCAGCTATTGGATGCACAGCGTGAAGTCACCCCAATGGTCGCGCCTGGTATTAAGAGTCGTTTGATTATCATGGT
ATGGGTGCCTGTGCTGGCAGCATTGGCTTATTTCTTGGTCGGTGATCGTACACCAGTATTTGATTTGTGGGCAGCAGAAG
ACAAAGTTGCTCAAGTGGCAGATGACTTATTGACCGGTAAGATTGACCAGCCACCCGCTTGGGCGATTGAAGATGGTACT
CAATTGATCAGCGCGATGCAGACTAACGTCTATCGTCATGCCGATGACCCTGATCGCTGGATGCGTTTATCAGAGCTGTT
CTTATCTTTGGAAGCCACTGACTCAGCGATTGAAGCTTTGTCTCGTGCTTATCGTCTGTCGCCTGACAACGAAGAAATCG
CCACCACTTATGCGCAGATTAGCTTTTTTGCTAATAAAGGTCAGCTTGATGCCAATAGCCGCCGTGTGCTGCAAGATGTT
CTTGCCAAAAATCCGCAGCACGAAGGTGCGCAAATGCTGATGGCAATGGGCGAGGCGCGTGGTAATAATTTTGAACAAGC
GCAAGGTTGGATTAAGCGGTTACGTAAGAGTATTGCTGCCAAACCAGGTGACCATACCCAAGCATTGAGCAGTCTTGATG
AGCTAAGTGCCAATGTCACGGCACAAGAGCAGCAAGCATCTGAAGGGATTGAAGTTACCATCTCTATTGATCGGTCATTG
TTGCCCCTAGTGAAAGCTGAAGATGTATTGTTTGTCGCGATACGTGATGTGAAAGGTGGCCCGCCATTTGCCGCCAAGCG
TTTACCGATTAGCGTGATTAAGCAAGGCGAAGCAACTGTTAGTCTAAGTGATTTAGATGCGATGATGCCAGAGCGCACAT
TAAAATCTGCGCGTGATGAAAAAGTTCAACTCGCTGTCATTGCTCGCATCAGTCATAGTGGTACTGCCATTGCCGAGTCA
GGTGATCTATCAGGTAATCCTGTGGTGATAAGCGTCGAGCAGAATCAAGTCAATGTGGCCATTAATCAGCAAGTTCCTTA
A

Upstream 100 bases:

>100_bases
CTGCGTTATCAGCAGTAGAAGAAGCGGAACTTGATCGTCTGTTATCACGAGCTGATCGCAATAAAACAGATCATGACATC
ACAAGCATAGAGGACAAAAA

Downstream 100 bases:

>100_bases
CTCGCTGAGTCCAGAATATCATCCTACATTTAGTGCGCGCTATCGTCTCATCTATGGCGCGCAACCTTCTCTCATGAACA
GATAAGTCATCATATGTTGC

Product: putative cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MTLFSTFGLFIALSLLIALVLAVIVITPWLRASRLRENPVDNQLLDINIGVFRERLTELQSDKDNGTIDDAHYQNQKIEL
ERQLLDAQREVTPMVAPGIKSRLIIMVWVPVLAALAYFLVGDRTPVFDLWAAEDKVAQVADDLLTGKIDQPPAWAIEDGT
QLISAMQTNVYRHADDPDRWMRLSELFLSLEATDSAIEALSRAYRLSPDNEEIATTYAQISFFANKGQLDANSRRVLQDV
LAKNPQHEGAQMLMAMGEARGNNFEQAQGWIKRLRKSIAAKPGDHTQALSSLDELSANVTAQEQQASEGIEVTISIDRSL
LPLVKAEDVLFVAIRDVKGGPPFAAKRLPISVIKQGEATVSLSDLDAMMPERTLKSARDEKVQLAVIARISHSGTAIAES
GDLSGNPVVISVEQNQVNVAINQQVP

Sequences:

>Translated_426_residues
MTLFSTFGLFIALSLLIALVLAVIVITPWLRASRLRENPVDNQLLDINIGVFRERLTELQSDKDNGTIDDAHYQNQKIEL
ERQLLDAQREVTPMVAPGIKSRLIIMVWVPVLAALAYFLVGDRTPVFDLWAAEDKVAQVADDLLTGKIDQPPAWAIEDGT
QLISAMQTNVYRHADDPDRWMRLSELFLSLEATDSAIEALSRAYRLSPDNEEIATTYAQISFFANKGQLDANSRRVLQDV
LAKNPQHEGAQMLMAMGEARGNNFEQAQGWIKRLRKSIAAKPGDHTQALSSLDELSANVTAQEQQASEGIEVTISIDRSL
LPLVKAEDVLFVAIRDVKGGPPFAAKRLPISVIKQGEATVSLSDLDAMMPERTLKSARDEKVQLAVIARISHSGTAIAES
GDLSGNPVVISVEQNQVNVAINQQVP
>Mature_425_residues
TLFSTFGLFIALSLLIALVLAVIVITPWLRASRLRENPVDNQLLDINIGVFRERLTELQSDKDNGTIDDAHYQNQKIELE
RQLLDAQREVTPMVAPGIKSRLIIMVWVPVLAALAYFLVGDRTPVFDLWAAEDKVAQVADDLLTGKIDQPPAWAIEDGTQ
LISAMQTNVYRHADDPDRWMRLSELFLSLEATDSAIEALSRAYRLSPDNEEIATTYAQISFFANKGQLDANSRRVLQDVL
AKNPQHEGAQMLMAMGEARGNNFEQAQGWIKRLRKSIAAKPGDHTQALSSLDELSANVTAQEQQASEGIEVTISIDRSLL
PLVKAEDVLFVAIRDVKGGPPFAAKRLPISVIKQGEATVSLSDLDAMMPERTLKSARDEKVQLAVIARISHSGTAIAESG
DLSGNPVVISVEQNQVNVAINQQVP

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46893; Mature: 46762

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLFSTFGLFIALSLLIALVLAVIVITPWLRASRLRENPVDNQLLDINIGVFRERLTELQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHH
SDKDNGTIDDAHYQNQKIELERQLLDAQREVTPMVAPGIKSRLIIMVWVPVLAALAYFLV
CCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
GDRTPVFDLWAAEDKVAQVADDLLTGKIDQPPAWAIEDGTQLISAMQTNVYRHADDPDRW
CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCHHHH
MRLSELFLSLEATDSAIEALSRAYRLSPDNEEIATTYAQISFFANKGQLDANSRRVLQDV
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHH
LAKNPQHEGAQMLMAMGEARGNNFEQAQGWIKRLRKSIAAKPGDHTQALSSLDELSANVT
HHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
AQEQQASEGIEVTISIDRSLLPLVKAEDVLFVAIRDVKGGPPFAAKRLPISVIKQGEATV
CHHHHHCCCCEEEEEECCCHHHHHCCCCEEEEEEEECCCCCCCHHHCCCHHHHCCCCCEE
SLSDLDAMMPERTLKSARDEKVQLAVIARISHSGTAIAESGDLSGNPVVISVEQNQVNVA
EHHHHHHHCCHHHHHHCCCCCEEEEEEEEECCCCCEEECCCCCCCCCEEEEEECCEEEEE
INQQVP
ECCCCC
>Mature Secondary Structure 
TLFSTFGLFIALSLLIALVLAVIVITPWLRASRLRENPVDNQLLDINIGVFRERLTELQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHH
SDKDNGTIDDAHYQNQKIELERQLLDAQREVTPMVAPGIKSRLIIMVWVPVLAALAYFLV
CCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
GDRTPVFDLWAAEDKVAQVADDLLTGKIDQPPAWAIEDGTQLISAMQTNVYRHADDPDRW
CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCHHHH
MRLSELFLSLEATDSAIEALSRAYRLSPDNEEIATTYAQISFFANKGQLDANSRRVLQDV
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHH
LAKNPQHEGAQMLMAMGEARGNNFEQAQGWIKRLRKSIAAKPGDHTQALSSLDELSANVT
HHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
AQEQQASEGIEVTISIDRSLLPLVKAEDVLFVAIRDVKGGPPFAAKRLPISVIKQGEATV
CHHHHHCCCCEEEEEECCCHHHHHCCCCEEEEEEEECCCCCCCHHHCCCHHHHCCCCCEE
SLSDLDAMMPERTLKSARDEKVQLAVIARISHSGTAIAESGDLSGNPVVISVEQNQVNVA
EHHHHHHHCCHHHHHHCCCCCEEEEEEEEECCCCCEEECCCCCCCCCEEEEEECCEEEEE
INQQVP
ECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]