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The map label for this gene is clpS [H]

Identifier: 93006502

GI number: 93006502

Start: 2066051

End: 2066458

Strand: Reverse

Name: clpS [H]

Synonym: Pcryo_1678

Alternate gene names: 93006502

Gene position: 2066458-2066051 (Counterclockwise)

Preceding gene: 93006503

Following gene: 93006501

Centisome position: 67.53

GC content: 44.61

Gene sequence:

>408_bases
ATGATAAAACAAACGATAGCAAGAGCGACGCCAATTACATCAGATTGGCACTTTCCACATATACCCATGCGTCTTGCGCA
AGTGGGTGAGCCTGAAGGTGAAACAGCCCCGCAGGCTGATGTATTGGTAGCAGAGCCGGAAGTCGCCAAGCCGCCTATGT
ATGCTGTGGTGATGTATAATGATAATTACACGCCGATGGAATTTGTCGTTTATATTTTACAATCTGAATTTCGTCACAGT
ATGGATTCGGCGGTTGAGATTATGCTGACGATTCATAATAGCAGCAAAGGTATTGCAGGTATTTATCCCAAAGATATTGC
TGAGACCAAAGCCAAAAAAGTTAACAGTCTTGCCCACCGTGAAGGGTACCCATTATTGACCCAAATCGAACCGCATCAAG
GCGAGTAA

Upstream 100 bases:

>100_bases
TGCTAGCCAAATATCTAGTGCTACCCCTTATTTTTAACGATTTTATACTCTCTTAAAGATAACCATTCATTAAACCTACT
GATTCATCTGTATTCCAATT

Downstream 100 bases:

>100_bases
AGCCTTACTCTAATTCTTGATGACGTATGTTTCTCTCAAGTTCACTATATTCTAACTATATATCTTTAATATTTTTCATA
AAATATATTCTTCTAGTGTT

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MIKQTIARATPITSDWHFPHIPMRLAQVGEPEGETAPQADVLVAEPEVAKPPMYAVVMYNDNYTPMEFVVYILQSEFRHS
MDSAVEIMLTIHNSSKGIAGIYPKDIAETKAKKVNSLAHREGYPLLTQIEPHQGE

Sequences:

>Translated_135_residues
MIKQTIARATPITSDWHFPHIPMRLAQVGEPEGETAPQADVLVAEPEVAKPPMYAVVMYNDNYTPMEFVVYILQSEFRHS
MDSAVEIMLTIHNSSKGIAGIYPKDIAETKAKKVNSLAHREGYPLLTQIEPHQGE
>Mature_135_residues
MIKQTIARATPITSDWHFPHIPMRLAQVGEPEGETAPQADVLVAEPEVAKPPMYAVVMYNDNYTPMEFVVYILQSEFRHS
MDSAVEIMLTIHNSSKGIAGIYPKDIAETKAKKVNSLAHREGYPLLTQIEPHQGE

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=80, Percent_Identity=42.5, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 15117; Mature: 15117

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKQTIARATPITSDWHFPHIPMRLAQVGEPEGETAPQADVLVAEPEVAKPPMYAVVMYN
CCCHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEC
DNYTPMEFVVYILQSEFRHSMDSAVEIMLTIHNSSKGIAGIYPKDIAETKAKKVNSLAHR
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
EGYPLLTQIEPHQGE
CCCCEEEECCCCCCC
>Mature Secondary Structure
MIKQTIARATPITSDWHFPHIPMRLAQVGEPEGETAPQADVLVAEPEVAKPPMYAVVMYN
CCCHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEC
DNYTPMEFVVYILQSEFRHSMDSAVEIMLTIHNSSKGIAGIYPKDIAETKAKKVNSLAHR
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
EGYPLLTQIEPHQGE
CCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA