| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is clpB [C]
Identifier: 93006501
GI number: 93006501
Start: 2062981
End: 2065518
Strand: Reverse
Name: clpB [C]
Synonym: Pcryo_1677
Alternate gene names: 93006501
Gene position: 2065518-2062981 (Counterclockwise)
Preceding gene: 93006502
Following gene: 93006500
Centisome position: 67.5
GC content: 43.89
Gene sequence:
>2538_bases ATGTTAAGTCGTCATCTTGAAGTTTCTTTGCGTTTAGCAATGACACTTGCGCGCCAAAAATCGCATGAGTATCTCACTGT TGAACATCTTTTACTGGCACTCTTAGAAAATACGCACGCTGCCAACACATTGACGGCCTGTAATGCAAATATCTCAGCAC TACGTACTGAGCTTGAGGCTTATATTAATAAGCATACTCCAACGGTCGATCCTGATACTGAGCAATCCCCGCAGCCGACC CAAAGCTTCGATCGTATTCTACAACGGGCAATTTTTCATGTGCAGTCTATTGGTGGCGGTCGTTTGGTTGAAGGGTCGGA TATTCTGGTGTCGATGTTTTCAGAACATGATACTTATGCGGTTTATTTGCTCAAAAAACAGGGCATCAGTCGTCTTGAGC TGACTCAGTATCTATCACACGGTCAAGATAAAGATGAGCCATCTGAGCCGCGTGCTTCTATGACGGGAGAGCGCCGTAGT AGTGCCTCAGAAAAAACCAGTAAAGATCCATTGGTTGAGTTTGCGACCAATTTAAATCAGCGTGCTGCTGAAGGTAAAAC AGATCCATTGATTGGGCGAGGTCCTGAGATTGAACGCGCCGCGCAAGTTTTGTGTCGCCGCCGCAAAAATAATCCACTAT TGGTCGGTGAACCGGGTGTTGGTAAAACCTCTATTGCTGAAGGGTTGGCGTGGTTGATTATCAATGATAAAGCCCCGAAA CCACTCAATGGTTGCGTAATTTATAGTCTTGATATTGGCTCATTGATCGCGGGTACTAAATATCGCGGCGATTTTGAAAA ACGTATGAAATCGCTATTAGATGCATTGAAGAAAAAACCCAATGCTATCTTGTTTATTGATGAGATTCATATGATTATTG GCGCTGGCTCATCAATGAGCAGTAATATGGATGTGTCTAACCTGATTAAGCCAGCACTTGCCAATGGTGAACTGCGTTGT ATCGGTTCAACCACTTTTACTGAATACCGTCAAGTGTTTGAAAAAGACCATGCCTTATCGCGTCGCTTCCAAAAAATCGA CGTGAAAGAGCCAAGTGTTGATGATACGATTGATATTTTGCGTGGTCTGAAACCGCGGTACGAAGAGTTCCATAATGTTG TCTATACTGACGAAGCACTAGTTACTGCCGTTCAATTATCAGCGAAACATATCCATGAGCGTTTTTTGCCGGATAAGGCC ATTGATGTTATTGATGAGGCTGGGGCTTATAAGCGTTTAGGGGTCGTGGCTGATGCAGACGATATAGAAGCGGAAGAAAG TTTCATTGCTGATATAGAGCAAGAGTTTGATGCACAGATTGAGGCTGATATTGACGGTCTCGACAGTGATACTTATAGTG ATAACGAAATGCAAGAGGAGGCAGATATTGCGAAAGCCAATGATCTTGCAAAATCGTCTGTTAATAAGAAAGCAAAAGGG AAGCGCGCTCCGATAAAAATTGATGTAGCAGATATCGAAGCGATTGTTGCCAAGCTTGCACGTATTCCGCCCAAGTCAGT ATCTAGTGATGATAAGAGTATTCTTCAGCATCTAGATCGTGATCTTAAGCATCTGGTATTTGGGCAAGATGAAGCGATTG CGACTCTAGCAGATGCGATTAAGCTGTCTCGTGCTGGTCTGAAAGCACCAGATAAGCCAATCGGCTCCTTCATGTTTGCT GGTCCGACAGGGGTTGGTAAAACGGAAGTTTCTCGTCAATTGGCAAATCTGTTGGGTGTTGAGCTGGTGCGCTTTGATAT GTCAGAGTACATGGAAGCACATACCGCCTCACGTTTGATTGGTGCGCCTCCAGGTTATGTGGGTTATGATCAAGGTGGTC TATTGACTGAAAAAATCAATCAGCATCCTCATTGTGTGTTACTGTTTGATGAGATCGAAAAAGCGCATCCGGATGTCTTC AACTTGTTATTACAAGTGATGGATCACGGTACATTGACAGATAATAATGGTCGGGTTGCTATCTTTAAGCAGGTCATTGT TATTATGACGACCAACGTCGGTGCTGAGAGTATCAGTCGATCTTCTATGGGCTTTACCCAGCAAGATCATAGCCGTGACA ATACAGAATCACTCAAGCGTGTGTTTACTCCGGAATTCCGTAACCGTCTTGATGCTATTATCCAGTTTAATCCGCTTGAT ACCTCAGTCGTTGTATCCGTGGTTGATAAATTCTTGGTTGAGCTACAGGTACAACTTGACGATAAGCAAGTTACTTTAGA GATTGATGATGAGGTACGTGATTATCTGGCAGCTAAAGGCTATGATCGCTTAATGGGCGCACGTCCAATGCAGCGCCTGA TTCAAGACGAAATCAAAAAGCCTCTGGCAAATATGATTCTATTTGGTGATTTAGTGAATGGCGGGGTTGTACATTTAACC TTGGAGCCAGAGGCATCAGATGGTGATACTATGAAGCTCGATAAGTCGTCAGATAAAGGGTCAGCGGATAGCCGTATTAT ATTGACTGTTGTTGAGACTCATGAGCCACGTCCAGACTCCGAATCATTAGCCAGTTAG
Upstream 100 bases:
>100_bases CATATTGCCCTTGAACAATCCATCCACCGCCCTGATTTACTTACTAACTCATTCATAAAGCTATCAATTATAAAGATAGG TATAACCGTAGGAAGTCGTT
Downstream 100 bases:
>100_bases GTTATTTTTCGCACTATAATAAAAACGGTTACTGCGGTAACCGTTTTTTTATTGCTAATATATATGACAACGCAACCCTA ATATTTTGTTAATATCACCC
Product: ATPase AAA-2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 845; Mature: 845
Protein sequence:
>845_residues MLSRHLEVSLRLAMTLARQKSHEYLTVEHLLLALLENTHAANTLTACNANISALRTELEAYINKHTPTVDPDTEQSPQPT QSFDRILQRAIFHVQSIGGGRLVEGSDILVSMFSEHDTYAVYLLKKQGISRLELTQYLSHGQDKDEPSEPRASMTGERRS SASEKTSKDPLVEFATNLNQRAAEGKTDPLIGRGPEIERAAQVLCRRRKNNPLLVGEPGVGKTSIAEGLAWLIINDKAPK PLNGCVIYSLDIGSLIAGTKYRGDFEKRMKSLLDALKKKPNAILFIDEIHMIIGAGSSMSSNMDVSNLIKPALANGELRC IGSTTFTEYRQVFEKDHALSRRFQKIDVKEPSVDDTIDILRGLKPRYEEFHNVVYTDEALVTAVQLSAKHIHERFLPDKA IDVIDEAGAYKRLGVVADADDIEAEESFIADIEQEFDAQIEADIDGLDSDTYSDNEMQEEADIAKANDLAKSSVNKKAKG KRAPIKIDVADIEAIVAKLARIPPKSVSSDDKSILQHLDRDLKHLVFGQDEAIATLADAIKLSRAGLKAPDKPIGSFMFA GPTGVGKTEVSRQLANLLGVELVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKINQHPHCVLLFDEIEKAHPDVF NLLLQVMDHGTLTDNNGRVAIFKQVIVIMTTNVGAESISRSSMGFTQQDHSRDNTESLKRVFTPEFRNRLDAIIQFNPLD TSVVVSVVDKFLVELQVQLDDKQVTLEIDDEVRDYLAAKGYDRLMGARPMQRLIQDEIKKPLANMILFGDLVNGGVVHLT LEPEASDGDTMKLDKSSDKGSADSRIILTVVETHEPRPDSESLAS
Sequences:
>Translated_845_residues MLSRHLEVSLRLAMTLARQKSHEYLTVEHLLLALLENTHAANTLTACNANISALRTELEAYINKHTPTVDPDTEQSPQPT QSFDRILQRAIFHVQSIGGGRLVEGSDILVSMFSEHDTYAVYLLKKQGISRLELTQYLSHGQDKDEPSEPRASMTGERRS SASEKTSKDPLVEFATNLNQRAAEGKTDPLIGRGPEIERAAQVLCRRRKNNPLLVGEPGVGKTSIAEGLAWLIINDKAPK PLNGCVIYSLDIGSLIAGTKYRGDFEKRMKSLLDALKKKPNAILFIDEIHMIIGAGSSMSSNMDVSNLIKPALANGELRC IGSTTFTEYRQVFEKDHALSRRFQKIDVKEPSVDDTIDILRGLKPRYEEFHNVVYTDEALVTAVQLSAKHIHERFLPDKA IDVIDEAGAYKRLGVVADADDIEAEESFIADIEQEFDAQIEADIDGLDSDTYSDNEMQEEADIAKANDLAKSSVNKKAKG KRAPIKIDVADIEAIVAKLARIPPKSVSSDDKSILQHLDRDLKHLVFGQDEAIATLADAIKLSRAGLKAPDKPIGSFMFA GPTGVGKTEVSRQLANLLGVELVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKINQHPHCVLLFDEIEKAHPDVF NLLLQVMDHGTLTDNNGRVAIFKQVIVIMTTNVGAESISRSSMGFTQQDHSRDNTESLKRVFTPEFRNRLDAIIQFNPLD TSVVVSVVDKFLVELQVQLDDKQVTLEIDDEVRDYLAAKGYDRLMGARPMQRLIQDEIKKPLANMILFGDLVNGGVVHLT LEPEASDGDTMKLDKSSDKGSADSRIILTVVETHEPRPDSESLAS >Mature_845_residues MLSRHLEVSLRLAMTLARQKSHEYLTVEHLLLALLENTHAANTLTACNANISALRTELEAYINKHTPTVDPDTEQSPQPT QSFDRILQRAIFHVQSIGGGRLVEGSDILVSMFSEHDTYAVYLLKKQGISRLELTQYLSHGQDKDEPSEPRASMTGERRS SASEKTSKDPLVEFATNLNQRAAEGKTDPLIGRGPEIERAAQVLCRRRKNNPLLVGEPGVGKTSIAEGLAWLIINDKAPK PLNGCVIYSLDIGSLIAGTKYRGDFEKRMKSLLDALKKKPNAILFIDEIHMIIGAGSSMSSNMDVSNLIKPALANGELRC IGSTTFTEYRQVFEKDHALSRRFQKIDVKEPSVDDTIDILRGLKPRYEEFHNVVYTDEALVTAVQLSAKHIHERFLPDKA IDVIDEAGAYKRLGVVADADDIEAEESFIADIEQEFDAQIEADIDGLDSDTYSDNEMQEEADIAKANDLAKSSVNKKAKG KRAPIKIDVADIEAIVAKLARIPPKSVSSDDKSILQHLDRDLKHLVFGQDEAIATLADAIKLSRAGLKAPDKPIGSFMFA GPTGVGKTEVSRQLANLLGVELVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKINQHPHCVLLFDEIEKAHPDVF NLLLQVMDHGTLTDNNGRVAIFKQVIVIMTTNVGAESISRSSMGFTQQDHSRDNTESLKRVFTPEFRNRLDAIIQFNPLD TSVVVSVVDKFLVELQVQLDDKQVTLEIDDEVRDYLAAKGYDRLMGARPMQRLIQDEIKKPLANMILFGDLVNGGVVHLT LEPEASDGDTMKLDKSSDKGSADSRIILTVVETHEPRPDSESLAS
Specific function: Part Of A Stress-Induced Multi-Chaperone System, It Is Involved In The Recovery Of The Cell From Heat-Induced Damage, In Cooperation With Dnak, Dnaj And Grpe. Acts Before Dnak, In The Processing Of Protein Aggregates. Protein Binding Stimulates The Atpase
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=331, Percent_Identity=34.1389728096677, Blast_Score=170, Evalue=5e-42, Organism=Escherichia coli, GI1788943, Length=861, Percent_Identity=39.8373983739837, Blast_Score=566, Evalue=1e-162, Organism=Escherichia coli, GI1787109, Length=450, Percent_Identity=53.5555555555556, Blast_Score=476, Evalue=1e-135, Organism=Saccharomyces cerevisiae, GI6320464, Length=707, Percent_Identity=42.8571428571429, Blast_Score=524, Evalue=1e-149, Organism=Saccharomyces cerevisiae, GI6323002, Length=471, Percent_Identity=35.244161358811, Blast_Score=251, Evalue=5e-67,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR013461 - InterPro: IPR023150 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small [H]
EC number: NA
Molecular weight: Translated: 93404; Mature: 93404
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRHLEVSLRLAMTLARQKSHEYLTVEHLLLALLENTHAANTLTACNANISALRTELEA CCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHH YINKHTPTVDPDTEQSPQPTQSFDRILQRAIFHVQSIGGGRLVEGSDILVSMFSEHDTYA HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCCCEE VYLLKKQGISRLELTQYLSHGQDKDEPSEPRASMTGERRSSASEKTSKDPLVEFATNLNQ EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHCCCCCCCCCHHHHHHHCCHH RAAEGKTDPLIGRGPEIERAAQVLCRRRKNNPLLVGEPGVGKTSIAEGLAWLIINDKAPK HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCEEEEEECCCCCC PLNGCVIYSLDIGSLIAGTKYRGDFEKRMKSLLDALKKKPNAILFIDEIHMIIGAGSSMS CCCCEEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCC SNMDVSNLIKPALANGELRCIGSTTFTEYRQVFEKDHALSRRFQKIDVKEPSVDDTIDIL CCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH RGLKPRYEEFHNVVYTDEALVTAVQLSAKHIHERFLPDKAIDVIDEAGAYKRLGVVADAD HCCCHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCEEECCC DIEAEESFIADIEQEFDAQIEADIDGLDSDTYSDNEMQEEADIAKANDLAKSSVNKKAKG CCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCC KRAPIKIDVADIEAIVAKLARIPPKSVSSDDKSILQHLDRDLKHLVFGQDEAIATLADAI CCCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH KLSRAGLKAPDKPIGSFMFAGPTGVGKTEVSRQLANLLGVELVRFDMSEYMEAHTASRLI HHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAPPGYVGYDQGGLLTEKINQHPHCVLLFDEIEKAHPDVFNLLLQVMDHGTLTDNNGRVA CCCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHCCCCEECCCCCEE IFKQVIVIMTTNVGAESISRSSMGFTQQDHSRDNTESLKRVFTPEFRNRLDAIIQFNPLD HHEEEEHEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHEEEECCCC TSVVVSVVDKFLVELQVQLDDKQVTLEIDDEVRDYLAAKGYDRLMGARPMQRLIQDEIKK HHHHHHHHHHHHHHHHEEECCCEEEEEECHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHH PLANMILFGDLVNGGVVHLTLEPEASDGDTMKLDKSSDKGSADSRIILTVVETHEPRPDS HHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCH ESLAS HHCCC >Mature Secondary Structure MLSRHLEVSLRLAMTLARQKSHEYLTVEHLLLALLENTHAANTLTACNANISALRTELEA CCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHH YINKHTPTVDPDTEQSPQPTQSFDRILQRAIFHVQSIGGGRLVEGSDILVSMFSEHDTYA HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCCCEE VYLLKKQGISRLELTQYLSHGQDKDEPSEPRASMTGERRSSASEKTSKDPLVEFATNLNQ EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHCCCCCCCCCHHHHHHHCCHH RAAEGKTDPLIGRGPEIERAAQVLCRRRKNNPLLVGEPGVGKTSIAEGLAWLIINDKAPK HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCEEEEEECCCCCC PLNGCVIYSLDIGSLIAGTKYRGDFEKRMKSLLDALKKKPNAILFIDEIHMIIGAGSSMS CCCCEEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCC SNMDVSNLIKPALANGELRCIGSTTFTEYRQVFEKDHALSRRFQKIDVKEPSVDDTIDIL CCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH RGLKPRYEEFHNVVYTDEALVTAVQLSAKHIHERFLPDKAIDVIDEAGAYKRLGVVADAD HCCCHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCEEECCC DIEAEESFIADIEQEFDAQIEADIDGLDSDTYSDNEMQEEADIAKANDLAKSSVNKKAKG CCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCC KRAPIKIDVADIEAIVAKLARIPPKSVSSDDKSILQHLDRDLKHLVFGQDEAIATLADAI CCCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH KLSRAGLKAPDKPIGSFMFAGPTGVGKTEVSRQLANLLGVELVRFDMSEYMEAHTASRLI HHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAPPGYVGYDQGGLLTEKINQHPHCVLLFDEIEKAHPDVFNLLLQVMDHGTLTDNNGRVA CCCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHCCCCEECCCCCEE IFKQVIVIMTTNVGAESISRSSMGFTQQDHSRDNTESLKRVFTPEFRNRLDAIIQFNPLD HHEEEEHEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHEEEECCCC TSVVVSVVDKFLVELQVQLDDKQVTLEIDDEVRDYLAAKGYDRLMGARPMQRLIQDEIKK HHHHHHHHHHHHHHHHEEECCCEEEEEECHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHH PLANMILFGDLVNGGVVHLTLEPEASDGDTMKLDKSSDKGSADSRIILTVVETHEPRPDS HHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCH ESLAS HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6209404 [H]