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The map label for this gene is yraR [H]

Identifier: 93006490

GI number: 93006490

Start: 2053043

End: 2053744

Strand: Reverse

Name: yraR [H]

Synonym: Pcryo_1666

Alternate gene names: 93006490

Gene position: 2053744-2053043 (Counterclockwise)

Preceding gene: 93006492

Following gene: 93006489

Centisome position: 67.12

GC content: 43.59

Gene sequence:

>702_bases
ATGCAGCGAAAAGCAATGGTAATAGGTGCAACGGGATTGGTCGGGCAACATCTTGTAAAGCAGCTGAGTGAGATTTATGA
CACATTGATTGTGATTGCACGGCGTCCGCCTCGTTACATCAATGCGAGCATGCGTTTTTATCAGGTGAATGATTTTGACA
ACTTAGCCGAAATCTTTGCAAGCATTGGCGCTGATCGAAAAACGGATGCTTTTAGTTGCTTGGGCACCACCAAAAAACAA
GCGGGTAGTGATGAAGTTTTTCGCAAGATTGACCATGATTATAATGTTGGTTTCGCCAAACTTTGCCAAGAGAAAGGCGT
TGAAAACTTCTTTTTATTGTCCTCGATGAATGCGGACATCAACAGTCGCTTTTTATATAATCGGGTAAAGGCTGAAACGG
AAGAGTCCATAATGGCATTAGGGTTTGCCCAATTGGTTATTTTCCGTCCGTCGTTACTACTTGGTAAACATAAGGGTCGC
CCGCTTGAAAGTCTGGGACAAAAAGCATTTCAGCTTATCTCGCCATTGGTGTCCGAGTCACTATCCTTACATCCTATTTC
AGCTAAGCGTGTCGCTAGTGCCATGGCGATGAGCGCCCATGAGATCTATCATCGTAGTAAATACCGCAGCGAACCCGCGA
TTAAAACCACTGATATTATCGAAAATAAACAGATGCTTGCTATGACCCGCGTAAAATATTAA

Upstream 100 bases:

>100_bases
TTTAGGTATGATACTACAGTGGTCAGCGTCACCGACGGGCTTTAAAAAGTCACATTTTTTACGATCATAAGTATTCCAAC
ACTCTATAAATGGATAGGAT

Downstream 100 bases:

>100_bases
GCTATTAATCAGATAACTTTTACATTTATTACTATAGTAAGCTCAGTATAAAAACGATACAGCGGGACTAGAATGAATTT
TTTGCAGCCTCTGTCTGCGC

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MQRKAMVIGATGLVGQHLVKQLSEIYDTLIVIARRPPRYINASMRFYQVNDFDNLAEIFASIGADRKTDAFSCLGTTKKQ
AGSDEVFRKIDHDYNVGFAKLCQEKGVENFFLLSSMNADINSRFLYNRVKAETEESIMALGFAQLVIFRPSLLLGKHKGR
PLESLGQKAFQLISPLVSESLSLHPISAKRVASAMAMSAHEIYHRSKYRSEPAIKTTDIIENKQMLAMTRVKY

Sequences:

>Translated_233_residues
MQRKAMVIGATGLVGQHLVKQLSEIYDTLIVIARRPPRYINASMRFYQVNDFDNLAEIFASIGADRKTDAFSCLGTTKKQ
AGSDEVFRKIDHDYNVGFAKLCQEKGVENFFLLSSMNADINSRFLYNRVKAETEESIMALGFAQLVIFRPSLLLGKHKGR
PLESLGQKAFQLISPLVSESLSLHPISAKRVASAMAMSAHEIYHRSKYRSEPAIKTTDIIENKQMLAMTRVKY
>Mature_233_residues
MQRKAMVIGATGLVGQHLVKQLSEIYDTLIVIARRPPRYINASMRFYQVNDFDNLAEIFASIGADRKTDAFSCLGTTKKQ
AGSDEVFRKIDHDYNVGFAKLCQEKGVENFFLLSSMNADINSRFLYNRVKAETEESIMALGFAQLVIFRPSLLLGKHKGR
PLESLGQKAFQLISPLVSESLSLHPISAKRVASAMAMSAHEIYHRSKYRSEPAIKTTDIIENKQMLAMTRVKY

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=234, Percent_Identity=32.0512820512821, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI148728168, Length=234, Percent_Identity=32.0512820512821, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI148728164, Length=234, Percent_Identity=32.0512820512821, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI148728166, Length=234, Percent_Identity=32.0512820512821, Blast_Score=91, Evalue=6e-19,
Organism=Escherichia coli, GI87082218, Length=173, Percent_Identity=34.6820809248555, Blast_Score=96, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71983631, Length=220, Percent_Identity=37.7272727272727, Blast_Score=120, Evalue=6e-28,
Organism=Saccharomyces cerevisiae, GI6320840, Length=154, Percent_Identity=33.1168831168831, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 26241; Mature: 26241

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRKAMVIGATGLVGQHLVKQLSEIYDTLIVIARRPPRYINASMRFYQVNDFDNLAEIFA
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHH
SIGADRKTDAFSCLGTTKKQAGSDEVFRKIDHDYNVGFAKLCQEKGVENFFLLSSMNADI
HHCCCCCCCHHHHHCCCHHCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEECCCCCH
NSRFLYNRVKAETEESIMALGFAQLVIFRPSLLLGKHKGRPLESLGQKAFQLISPLVSES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
LSLHPISAKRVASAMAMSAHEIYHRSKYRSEPAIKTTDIIENKQMLAMTRVKY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure
MQRKAMVIGATGLVGQHLVKQLSEIYDTLIVIARRPPRYINASMRFYQVNDFDNLAEIFA
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHH
SIGADRKTDAFSCLGTTKKQAGSDEVFRKIDHDYNVGFAKLCQEKGVENFFLLSSMNADI
HHCCCCCCCHHHHHCCCHHCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEECCCCCH
NSRFLYNRVKAETEESIMALGFAQLVIFRPSLLLGKHKGRPLESLGQKAFQLISPLVSES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
LSLHPISAKRVASAMAMSAHEIYHRSKYRSEPAIKTTDIIENKQMLAMTRVKY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]