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The map label for this gene is rraA [C]

Identifier: 93006489

GI number: 93006489

Start: 2052254

End: 2052787

Strand: Reverse

Name: rraA [C]

Synonym: Pcryo_1665

Alternate gene names: 93006489

Gene position: 2052787-2052254 (Counterclockwise)

Preceding gene: 93006490

Following gene: 93006488

Centisome position: 67.09

GC content: 43.26

Gene sequence:

>534_bases
ATGCCAGAATCAGTAACAATGACCAAAGAAAACTTTGTAACTTGTGATTTATTAGATGCCAATCCTGAATCACAGGTATG
CCTGCCTAATATCGAAGGTAAATCGTTTTATAGTTTTGGCGGCAAAGACAAATTCTGCGGTGAGATTGTGACCGTCAAAT
GTTTTGAAGATAATAGTCGCGTCAAATCGTTGCTTAACAATGATGGTAAAGACAAAGACGGTAATGGCAAGGTGTTGGTC
GTTGACGGCGGTGGTTCGATGCGTTGTGCGCTGTTAGGTGACATGATTGCACAGTCGGCTATTGATAATGGCTGGGCAGG
GGTTGTGGTGTATGGCTGTGTTCGTGATGTTGATGATATGGCAGCAATGGACATCGGGGTAATGGCGCTTGGTTGTATCC
CGCGTAAATCAAATCGCCGCGATGAAGGTCAAACCGATCTTGAAATCAGCTTTGGTGATTTAACGCTAAATTCTGGTATG
TTTGTCTACGCAGACAATAACGGCATTATCGCTAGTGACAAGCCATTAATTTAA

Upstream 100 bases:

>100_bases
GGTTTTATCTAGGATAAACTATACTATAGTAAATAGCCTAAGTAATGTTTAAGTTTAATAAGTTAAAACAATTTAACCAT
AACAGACAAGGAGTCTCACC

Downstream 100 bases:

>100_bases
AGACAAAGTCTGTTTTTGAAGAGTTCCCTATAAAGACCTTGGCTCGCAAGCTAAGGTCTTTTCGTTTATCAGCCCTATTC
TTAGCAATAAATCTTTATTT

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MPESVTMTKENFVTCDLLDANPESQVCLPNIEGKSFYSFGGKDKFCGEIVTVKCFEDNSRVKSLLNNDGKDKDGNGKVLV
VDGGGSMRCALLGDMIAQSAIDNGWAGVVVYGCVRDVDDMAAMDIGVMALGCIPRKSNRRDEGQTDLEISFGDLTLNSGM
FVYADNNGIIASDKPLI

Sequences:

>Translated_177_residues
MPESVTMTKENFVTCDLLDANPESQVCLPNIEGKSFYSFGGKDKFCGEIVTVKCFEDNSRVKSLLNNDGKDKDGNGKVLV
VDGGGSMRCALLGDMIAQSAIDNGWAGVVVYGCVRDVDDMAAMDIGVMALGCIPRKSNRRDEGQTDLEISFGDLTLNSGM
FVYADNNGIIASDKPLI
>Mature_176_residues
PESVTMTKENFVTCDLLDANPESQVCLPNIEGKSFYSFGGKDKFCGEIVTVKCFEDNSRVKSLLNNDGKDKDGNGKVLVV
DGGGSMRCALLGDMIAQSAIDNGWAGVVVYGCVRDVDDMAAMDIGVMALGCIPRKSNRRDEGQTDLEISFGDLTLNSGMF
VYADNNGIIASDKPLI

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=147, Percent_Identity=46.2585034013605, Blast_Score=134, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 18994; Mature: 18863

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPESVTMTKENFVTCDLLDANPESQVCLPNIEGKSFYSFGGKDKFCGEIVTVKCFEDNSR
CCCCEEEECCCEEEEEEECCCCCCCEEECCCCCCEEEECCCCCCCCCEEEEEEEECCCHH
VKSLLNNDGKDKDGNGKVLVVDGGGSMRCALLGDMIAQSAIDNGWAGVVVYGCVRDVDDM
HHHHHCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCCCEEEEEEEHHCHHHH
AAMDIGVMALGCIPRKSNRRDEGQTDLEISFGDLTLNSGMFVYADNNGIIASDKPLI
HHHHHCEEEEECCCCCCCCCCCCCCEEEEEECCEEECCCEEEEECCCCEEECCCCCC
>Mature Secondary Structure 
PESVTMTKENFVTCDLLDANPESQVCLPNIEGKSFYSFGGKDKFCGEIVTVKCFEDNSR
CCCEEEECCCEEEEEEECCCCCCCEEECCCCCCEEEECCCCCCCCCEEEEEEEECCCHH
VKSLLNNDGKDKDGNGKVLVVDGGGSMRCALLGDMIAQSAIDNGWAGVVVYGCVRDVDDM
HHHHHCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCCCEEEEEEEHHCHHHH
AAMDIGVMALGCIPRKSNRRDEGQTDLEISFGDLTLNSGMFVYADNNGIIASDKPLI
HHHHHCEEEEECCCCCCCCCCCCCCEEEEEECCEEECCCEEEEECCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA