Click here to switch to the map view.

The map label for this gene is 93006404

Identifier: 93006404

GI number: 93006404

Start: 1938322

End: 1939545

Strand: Reverse

Name: 93006404

Synonym: Pcryo_1580

Alternate gene names: NA

Gene position: 1939545-1938322 (Counterclockwise)

Preceding gene: 93006405

Following gene: 93006403

Centisome position: 63.39

GC content: 42.08

Gene sequence:

>1224_bases
ATGGGCGCAAATTTTAATCTTAAAACCCTCACGGTAGCTATTGCTACTCTTTCTATTGCTAGTGTCGCGAGCGCGGCAGG
TCTTGATCGTTCAGGTCAAGATATCACGGCGTTTTTACAAAATGGTGTATATGCTGAAGCGGTTTATACCTATATTGATG
GCGATGTCACTGGTAAAGATTCGTCAGGTAAAGAGATTGATGATATTGCTGAGTCTTACGACTTCTTTCGTTATGGTGTA
AAAGCGGATATCAACGACACTTTTAGTGTTGGGGTTTTATATGACGAGCCTTTTGGTGCAGCAGCTGACTATAGTGGTAA
GAATGACTTTGTAGATCAAAATCCTCTTTCACCTAGAAATGGTGAAGGTACCAATGTTGAAGTTCGTACTGAAAGCATCA
CTGGCATTGTTGGCGCAAAACTTGGCGAAAATAAGAACTTCCAGGTATATGGTGGTCCAGTAGCTCAACGTGTGAAAGCC
AATGTGAAATTGCGTGGAACTGCTTATAGTATCGCTAATGGTTATAGCACCAATATCAGTGCTGATCAGGACTATGGCTG
GTTAGCTGGTGTCGCTTACAGTAAGCCTGAAATTGCCTTACAAGCTGCTCTAACGTATCGTTCAGAAATTGAGCATAATA
CACAGGCTGCAGAAATCTATCCTTTCGCTCAGAGAGTTGGTCTTTCGCCAAATAGAATCGATAATATTGAGATCACTACC
CCTGAATCAGTGAATTTTGATTTCCAAACGGGTATTAATCCTACGATGCTAGCTACAGCAAAAGTACGCTGGGTACCATG
GAGTGATTTTGCGATTACACCATCATTATACAATGAGACTAGCCAAAAATTAGCAGGTCAGCCTGGTATTCCTCCTGAAG
GTTTAGATTTGGTTAGCTATGATAAAGACCAGTGGCAGGTTGAATTAGGTCTTGCTAAACGTCTAACGCCAGTATTAGCA
GTGACCGGTACGGTTGGCTGGGACAGTGGTGCTGGCAATCCAGTTACGTCACTAGGTCCTATTGAAGGTTACTATAGCGC
TGGTCTTGGTGCAAAGTATAATTTGACCGACAACTGGGCTATTTCTGCTGGTGGTAAATACCTGTGGTTTGGTGATGCCC
AAGGTCAGATACCTAGTAAAACTGTTGTCAGTAACTTTGAAGATAATGATGGCTTTGCTCTTGGTGTAAAATTATCTTAT
CAAGCCAAGCAAAACTTTAACTAA

Upstream 100 bases:

>100_bases
TTTTAGTGTATTAAAAACATTAGTATCCTTCACCTTAAGTACCGTCTACCTAACAAAGTTCGGGATAGCGGTAAACAACG
TGGATGTTTGGAGATACACA

Downstream 100 bases:

>100_bases
GCGCTTATGCCTTTACTTTAAATAATACTGTTTTAACAATTTTAAAAGCGATCCTTAAGGGGTCGTTTTTTTATGTATTA
AATTAAAAATCTAGAATTAC

Product: aromatic hydrocarbon degradation membrane protein

Products: NA

Alternate protein names: Outer Membrane Protein; Outer Membrane Transporter Ompp1/Fadl/dx Family; Long-Chain Fatty Acid ABC Transporter; Outer Membrane Transporter Family Protein; Outer Membrane Transporter; Aromatic Hydrocarbon Degradation Membrane Protein; Long-Chain Fatty Acid Protein; Transport Of Long-Chain Fatty Acids; OmpP1/FadL/dX Family Outer Membrane Transporter; FadL Family Outer Membrane Protein; Outer Membrane Protein E

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MGANFNLKTLTVAIATLSIASVASAAGLDRSGQDITAFLQNGVYAEAVYTYIDGDVTGKDSSGKEIDDIAESYDFFRYGV
KADINDTFSVGVLYDEPFGAAADYSGKNDFVDQNPLSPRNGEGTNVEVRTESITGIVGAKLGENKNFQVYGGPVAQRVKA
NVKLRGTAYSIANGYSTNISADQDYGWLAGVAYSKPEIALQAALTYRSEIEHNTQAAEIYPFAQRVGLSPNRIDNIEITT
PESVNFDFQTGINPTMLATAKVRWVPWSDFAITPSLYNETSQKLAGQPGIPPEGLDLVSYDKDQWQVELGLAKRLTPVLA
VTGTVGWDSGAGNPVTSLGPIEGYYSAGLGAKYNLTDNWAISAGGKYLWFGDAQGQIPSKTVVSNFEDNDGFALGVKLSY
QAKQNFN

Sequences:

>Translated_407_residues
MGANFNLKTLTVAIATLSIASVASAAGLDRSGQDITAFLQNGVYAEAVYTYIDGDVTGKDSSGKEIDDIAESYDFFRYGV
KADINDTFSVGVLYDEPFGAAADYSGKNDFVDQNPLSPRNGEGTNVEVRTESITGIVGAKLGENKNFQVYGGPVAQRVKA
NVKLRGTAYSIANGYSTNISADQDYGWLAGVAYSKPEIALQAALTYRSEIEHNTQAAEIYPFAQRVGLSPNRIDNIEITT
PESVNFDFQTGINPTMLATAKVRWVPWSDFAITPSLYNETSQKLAGQPGIPPEGLDLVSYDKDQWQVELGLAKRLTPVLA
VTGTVGWDSGAGNPVTSLGPIEGYYSAGLGAKYNLTDNWAISAGGKYLWFGDAQGQIPSKTVVSNFEDNDGFALGVKLSY
QAKQNFN
>Mature_406_residues
GANFNLKTLTVAIATLSIASVASAAGLDRSGQDITAFLQNGVYAEAVYTYIDGDVTGKDSSGKEIDDIAESYDFFRYGVK
ADINDTFSVGVLYDEPFGAAADYSGKNDFVDQNPLSPRNGEGTNVEVRTESITGIVGAKLGENKNFQVYGGPVAQRVKAN
VKLRGTAYSIANGYSTNISADQDYGWLAGVAYSKPEIALQAALTYRSEIEHNTQAAEIYPFAQRVGLSPNRIDNIEITTP
ESVNFDFQTGINPTMLATAKVRWVPWSDFAITPSLYNETSQKLAGQPGIPPEGLDLVSYDKDQWQVELGLAKRLTPVLAV
TGTVGWDSGAGNPVTSLGPIEGYYSAGLGAKYNLTDNWAISAGGKYLWFGDAQGQIPSKTVVSNFEDNDGFALGVKLSYQ
AKQNFN

Specific function: Unknown

COG id: COG2067

COG function: function code I; Long-chain fatty acid transport protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43691; Mature: 43559

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGANFNLKTLTVAIATLSIASVASAAGLDRSGQDITAFLQNGVYAEAVYTYIDGDVTGKD
CCCCCCCHHEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEEEEEEECCCCCCCC
SSGKEIDDIAESYDFFRYGVKADINDTFSVGVLYDEPFGAAADYSGKNDFVDQNPLSPRN
CCCCHHHHHHHHHHHHHCCCEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
GEGTNVEVRTESITGIVGAKLGENKNFQVYGGPVAQRVKANVKLRGTAYSIANGYSTNIS
CCCCEEEEEECCCCEEEEHCCCCCCCEEEECCHHHHHEECCEEEEEEEEEECCCCCCCCC
ADQDYGWLAGVAYSKPEIALQAALTYRSEIEHNTQAAEIYPFAQRVGLSPNRIDNIEITT
CCCCCCEEEEEECCCCCEEEHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCEEEEC
PESVNFDFQTGINPTMLATAKVRWVPWSDFAITPSLYNETSQKLAGQPGIPPEGLDLVSY
CCCCCEEEECCCCCEEEEEEEEEEECCCCCEECHHHHHHHHHHHCCCCCCCCCCCEEEEC
DKDQWQVELGLAKRLTPVLAVTGTVGWDSGAGNPVTSLGPIEGYYSAGLGAKYNLTDNWA
CCCCEEEEECHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCEEECCCCCEE
ISAGGKYLWFGDAQGQIPSKTVVSNFEDNDGFALGVKLSYQAKQNFN
EECCCEEEEEECCCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCCCC
>Mature Secondary Structure 
GANFNLKTLTVAIATLSIASVASAAGLDRSGQDITAFLQNGVYAEAVYTYIDGDVTGKD
CCCCCCHHEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEEEEEEECCCCCCCC
SSGKEIDDIAESYDFFRYGVKADINDTFSVGVLYDEPFGAAADYSGKNDFVDQNPLSPRN
CCCCHHHHHHHHHHHHHCCCEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
GEGTNVEVRTESITGIVGAKLGENKNFQVYGGPVAQRVKANVKLRGTAYSIANGYSTNIS
CCCCEEEEEECCCCEEEEHCCCCCCCEEEECCHHHHHEECCEEEEEEEEEECCCCCCCCC
ADQDYGWLAGVAYSKPEIALQAALTYRSEIEHNTQAAEIYPFAQRVGLSPNRIDNIEITT
CCCCCCEEEEEECCCCCEEEHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCEEEEC
PESVNFDFQTGINPTMLATAKVRWVPWSDFAITPSLYNETSQKLAGQPGIPPEGLDLVSY
CCCCCEEEECCCCCEEEEEEEEEEECCCCCEECHHHHHHHHHHHCCCCCCCCCCCEEEEC
DKDQWQVELGLAKRLTPVLAVTGTVGWDSGAGNPVTSLGPIEGYYSAGLGAKYNLTDNWA
CCCCEEEEECHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCEEECCCCCEE
ISAGGKYLWFGDAQGQIPSKTVVSNFEDNDGFALGVKLSYQAKQNFN
EECCCEEEEEECCCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA