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The map label for this gene is yddE [C]

Identifier: 93006325

GI number: 93006325

Start: 1842433

End: 1843245

Strand: Reverse

Name: yddE [C]

Synonym: Pcryo_1499

Alternate gene names: 93006325

Gene position: 1843245-1842433 (Counterclockwise)

Preceding gene: 93006326

Following gene: 93006324

Centisome position: 60.24

GC content: 40.84

Gene sequence:

>813_bases
ATGCAATTAGAAATCAATGTTATCGATGCCTTTACTAATACTGTGTTTAAAGGCAATTCAGCGGCAATGATTATCACAGA
AAGTTGGTTGTCTGAGAAACTCATGCAATCTATTGCTTTTGAAAATAATTTATCAGAGACGGCTTTTATAGTCTTGGATA
ATAAAGGTACTTATCATATTCGATGGTTTTCACCGCTTACGGAGATTGATTTTTGTGGTCATGCGACCTTGGCTTCTGCC
TTTGTACTGTTTAAGAAAAACCCTACTTTGACGTCTATTAAGTTTTCAGCTGAAGCAGTTGGGGTTTTAGCGGTCAAGCA
AACCGATCATGATAAAATACAGATGGATTTTCCCAATACTAAGCCTGAGAAAGTCAGTGATATCCCTGATAGTTTGCTGG
CAGGATTGTCTATTGTCCCTATTGAAGTCTATAAAAACTCACAGGCATATTTTGTGATTTATGACTCGGAATCTGACGTG
TTAAATGTAGAGCGTGATAATGACGCGCTAAAACAACTTGCGCCTCTCGATGTGGTTGTCACTTGTCAGGCTAAATCTGC
TGACTACAAAGACTACGATTTTATTTCACGTTATTTCTGGCCTGCCAATGGTGGTGATGAAGATCCAGTTACGGGTTCGG
CTCATACTGGACTAGCGCCATTATGGGCACAGCGACTGGGTAAAAATACATTGGTTGCTTATCAAGCGTCAAAACGTGGC
GGGGTACTAGACTGTGTGGTTGCAGGAGATAGAGTGCTTATCTCCGGTCATGCTGTGCATTATTTGACGGGATTTATTAC
GGTCGAGGAGTAA

Upstream 100 bases:

>100_bases
GCCTTATAAAGGCTGTGAAATTTCATTCTACTTCTATTAACAGTAGTGTGTTTTTTACCGTAAATCAGCGATATCCCTAT
CATAAAAATAAGAGCGTAAT

Downstream 100 bases:

>100_bases
GTTTTGTCTGAATTAAAAACAGTGGGGCTTTTTGCTCTTACTGCATTGGCTGAAATCGCAGGTTGTTATCTGCCTTATCT
GTGGCTACGAGAGGGTAAGT

Product: phenazine biosynthesis PhzC/PhzF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MQLEINVIDAFTNTVFKGNSAAMIITESWLSEKLMQSIAFENNLSETAFIVLDNKGTYHIRWFSPLTEIDFCGHATLASA
FVLFKKNPTLTSIKFSAEAVGVLAVKQTDHDKIQMDFPNTKPEKVSDIPDSLLAGLSIVPIEVYKNSQAYFVIYDSESDV
LNVERDNDALKQLAPLDVVVTCQAKSADYKDYDFISRYFWPANGGDEDPVTGSAHTGLAPLWAQRLGKNTLVAYQASKRG
GVLDCVVAGDRVLISGHAVHYLTGFITVEE

Sequences:

>Translated_270_residues
MQLEINVIDAFTNTVFKGNSAAMIITESWLSEKLMQSIAFENNLSETAFIVLDNKGTYHIRWFSPLTEIDFCGHATLASA
FVLFKKNPTLTSIKFSAEAVGVLAVKQTDHDKIQMDFPNTKPEKVSDIPDSLLAGLSIVPIEVYKNSQAYFVIYDSESDV
LNVERDNDALKQLAPLDVVVTCQAKSADYKDYDFISRYFWPANGGDEDPVTGSAHTGLAPLWAQRLGKNTLVAYQASKRG
GVLDCVVAGDRVLISGHAVHYLTGFITVEE
>Mature_270_residues
MQLEINVIDAFTNTVFKGNSAAMIITESWLSEKLMQSIAFENNLSETAFIVLDNKGTYHIRWFSPLTEIDFCGHATLASA
FVLFKKNPTLTSIKFSAEAVGVLAVKQTDHDKIQMDFPNTKPEKVSDIPDSLLAGLSIVPIEVYKNSQAYFVIYDSESDV
LNVERDNDALKQLAPLDVVVTCQAKSADYKDYDFISRYFWPANGGDEDPVTGSAHTGLAPLWAQRLGKNTLVAYQASKRG
GVLDCVVAGDRVLISGHAVHYLTGFITVEE

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=293, Percent_Identity=37.2013651877133, Blast_Score=145, Evalue=4e-35,
Organism=Homo sapiens, GI74316009, Length=256, Percent_Identity=36.328125, Blast_Score=125, Evalue=4e-29,
Organism=Escherichia coli, GI1787737, Length=295, Percent_Identity=27.7966101694915, Blast_Score=79, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17542160, Length=305, Percent_Identity=33.1147540983607, Blast_Score=137, Evalue=7e-33,
Organism=Caenorhabditis elegans, GI17542154, Length=305, Percent_Identity=33.1147540983607, Blast_Score=137, Evalue=7e-33,
Organism=Caenorhabditis elegans, GI17542158, Length=310, Percent_Identity=29.3548387096774, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17542152, Length=310, Percent_Identity=29.3548387096774, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6321818, Length=291, Percent_Identity=27.4914089347079, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29766; Mature: 29766

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLEINVIDAFTNTVFKGNSAAMIITESWLSEKLMQSIAFENNLSETAFIVLDNKGTYHI
CEEEEEEEECCHHHEEECCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEE
RWFSPLTEIDFCGHATLASAFVLFKKNPTLTSIKFSAEAVGVLAVKQTDHDKIQMDFPNT
EEECCCCCCCCCCCHHHHEEEEEEECCCCEEEEEECCCEEEEEEEEECCCCEEEEECCCC
KPEKVSDIPDSLLAGLSIVPIEVYKNSQAYFVIYDSESDVLNVERDNDALKQLAPLDVVV
CCCHHHCCCHHHHCCCEEEEEEEEECCCEEEEEECCCCCEEEEECCCHHHHHCCCCEEEE
TCQAKSADYKDYDFISRYFWPANGGDEDPVTGSAHTGLAPLWAQRLGKNTLVAYQASKRG
EEECCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCC
GVLDCVVAGDRVLISGHAVHYLTGFITVEE
CEEEEEEECCEEEEECCEEEEEEEEEEEEC
>Mature Secondary Structure
MQLEINVIDAFTNTVFKGNSAAMIITESWLSEKLMQSIAFENNLSETAFIVLDNKGTYHI
CEEEEEEEECCHHHEEECCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEE
RWFSPLTEIDFCGHATLASAFVLFKKNPTLTSIKFSAEAVGVLAVKQTDHDKIQMDFPNT
EEECCCCCCCCCCCHHHHEEEEEEECCCCEEEEEECCCEEEEEEEEECCCCEEEEECCCC
KPEKVSDIPDSLLAGLSIVPIEVYKNSQAYFVIYDSESDVLNVERDNDALKQLAPLDVVV
CCCHHHCCCHHHHCCCEEEEEEEEECCCEEEEEECCCCCEEEEECCCHHHHHCCCCEEEE
TCQAKSADYKDYDFISRYFWPANGGDEDPVTGSAHTGLAPLWAQRLGKNTLVAYQASKRG
EEECCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCC
GVLDCVVAGDRVLISGHAVHYLTGFITVEE
CEEEEEEECCEEEEECCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]