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The map label for this gene is yfjP [H]

Identifier: 93006271

GI number: 93006271

Start: 1777368

End: 1778027

Strand: Direct

Name: yfjP [H]

Synonym: Pcryo_1445

Alternate gene names: 93006271

Gene position: 1777368-1778027 (Clockwise)

Preceding gene: 93006270

Following gene: 93006273

Centisome position: 58.09

GC content: 41.06

Gene sequence:

>660_bases
ATGGACGTACAAAATACTGAAATAATAAAAACCGTTCAAACAATTGAAAATAATGAACAGCTAAAACTTCACATCGATGC
ACTTATTGCTATTGAACCAAAATTTTCTTCTATCTATGAGCAAGTAGGTGCTCCAGACTTAAGACGTAATACTGGCGGCT
TTGAGCAGCTAATGAGAGCGATAATTGGTCAACAGCTATCTGTAGCGGCGGCTTCCAGCATTTGGAAAAAACTGCTTAAT
GCTAACCTCACCTCACCGCAAACGATTATTCAGGTAGAAGACGATATATTGCGAACACAAGGGTTATCTAAGCAAAAAAT
TCGTTATACGCGCTCATTGGTTGAGCATGATATCGACTTTGAAGCATTAACCACCATAAGTGATAAAGAAGTGCTTGAGA
TACTCACTGCCGTCGTTGGTATTGGCTGTTGGACGGCTGAAATGTACTTATTATTCTCTTTAGGACGAGCTGATGTACTG
GCGGTCGATGACTTGGCGATTAAAGTCGCAGCGATGGATTTGCTAGGTCTAGCAGAACGTCCAACACCAAAACAATTAAA
AATGGCGACCAAAGATTGGTCGCCACATCGGAGTGCTGCTAGCTTACTACTATGGTCACATTACGGCTGGCTAAATAATA
GAAAAGCAGTGCCTTTATAA

Upstream 100 bases:

>100_bases
GTTTAGGAACAAAAAAGGACTGCAAATAAGCAGTCTTTTTTTATAGCTGTATTTAACCTATATTCAGTAGGTAAATTTAA
TTATTTAGGACAAGTCTCTC

Downstream 100 bases:

>100_bases
TAGGCTATCTTATTAAATGCTTCATATCTTAGGGAATCTAAAGCTCTTTTTAACCTGCTTGAACTTTAGTTTTGCTAAAT
TATACCCACGATTTTTATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDVQNTEIIKTVQTIENNEQLKLHIDALIAIEPKFSSIYEQVGAPDLRRNTGGFEQLMRAIIGQQLSVAAASSIWKKLLN
ANLTSPQTIIQVEDDILRTQGLSKQKIRYTRSLVEHDIDFEALTTISDKEVLEILTAVVGIGCWTAEMYLLFSLGRADVL
AVDDLAIKVAAMDLLGLAERPTPKQLKMATKDWSPHRSAASLLLWSHYGWLNNRKAVPL

Sequences:

>Translated_219_residues
MDVQNTEIIKTVQTIENNEQLKLHIDALIAIEPKFSSIYEQVGAPDLRRNTGGFEQLMRAIIGQQLSVAAASSIWKKLLN
ANLTSPQTIIQVEDDILRTQGLSKQKIRYTRSLVEHDIDFEALTTISDKEVLEILTAVVGIGCWTAEMYLLFSLGRADVL
AVDDLAIKVAAMDLLGLAERPTPKQLKMATKDWSPHRSAASLLLWSHYGWLNNRKAVPL
>Mature_219_residues
MDVQNTEIIKTVQTIENNEQLKLHIDALIAIEPKFSSIYEQVGAPDLRRNTGGFEQLMRAIIGQQLSVAAASSIWKKLLN
ANLTSPQTIIQVEDDILRTQGLSKQKIRYTRSLVEHDIDFEALTTISDKEVLEILTAVVGIGCWTAEMYLLFSLGRADVL
AVDDLAIKVAAMDLLGLAERPTPKQLKMATKDWSPHRSAASLLLWSHYGWLNNRKAVPL

Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, 3-methylguanine, 7-methylguanine, O2- methylthymine, and O2-methylcytosine from the damaged DNA polymer formed by alkylation lesions [H]

COG id: COG0122

COG function: function code L; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alkylbase DNA glycosidase alkA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR003265
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF00730 HhH-GPD [H]

EC number: =3.2.2.21 [H]

Molecular weight: Translated: 24450; Mature: 24450

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVQNTEIIKTVQTIENNEQLKLHIDALIAIEPKFSSIYEQVGAPDLRRNTGGFEQLMRA
CCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCHHCCCCCHHHHHHH
IIGQQLSVAAASSIWKKLLNANLTSPQTIIQVEDDILRTQGLSKQKIRYTRSLVEHDIDF
HHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCH
EALTTISDKEVLEILTAVVGIGCWTAEMYLLFSLGRADVLAVDDLAIKVAAMDLLGLAER
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCC
PTPKQLKMATKDWSPHRSAASLLLWSHYGWLNNRKAVPL
CCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDVQNTEIIKTVQTIENNEQLKLHIDALIAIEPKFSSIYEQVGAPDLRRNTGGFEQLMRA
CCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCHHCCCCCHHHHHHH
IIGQQLSVAAASSIWKKLLNANLTSPQTIIQVEDDILRTQGLSKQKIRYTRSLVEHDIDF
HHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCH
EALTTISDKEVLEILTAVVGIGCWTAEMYLLFSLGRADVLAVDDLAIKVAAMDLLGLAER
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCC
PTPKQLKMATKDWSPHRSAASLLLWSHYGWLNNRKAVPL
CCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]