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The map label for this gene is ydaL [C]

Identifier: 93006270

GI number: 93006270

Start: 1776528

End: 1777259

Strand: Direct

Name: ydaL [C]

Synonym: Pcryo_1444

Alternate gene names: 93006270

Gene position: 1776528-1777259 (Clockwise)

Preceding gene: 93006269

Following gene: 93006271

Centisome position: 58.06

GC content: 42.35

Gene sequence:

>732_bases
ATGTCAAACTCTCTATTTTCAAAAGAAATGCAAGACCAACTTAAAGAGCTTAAAGGTCAATTGAGTAAAGGTCGTGATAC
CGTGTCACCTGATGGCGACGACGGTAAGCCCACTGAGCCTGTCTCGCTATTGACTCAAAAGCAAGTTAAAAAAACCGTCA
AACAGATGGATAGCGAACATATCGATGATGATAAAGTCTTGTTCATGCAAGCGATGAATGGTGTCAATCAACTCGACGAT
AAAAACGTACGTTCACCTGCCAATGCAGCAAAAGCCAAGAAGCCTGATGCAGCGACACTGTCTAAACGTGCAGCCGCTCA
AGGTGGCGAAGCAAGCGACTTGGGCGCTGGTTTATCAGATATGCAGGCTTTATTGAACCCTGTTGCTGGTGAAGCCTACT
TATCTTATAAAAACCCTACCTTACAAAACAAAATTTTTACCCAGCTCAAACAAGGTAAATTACGTTGGTATGATGCTGTA
GATATTCATGGCTGCACTATTGAAGAAGCGCGTGTAGCAATGACTCAATTACTCAGCCAAGCAAAGCAAAACAATGAAAC
ATCGGTAAAAATCGTCCATGGTAAAGGTAGTGAAGCGATTCTAAAAACTTGCGTCAACGGTTGGTTACGTCAATTACCAG
AAGTGTTGGCATTTTGCTCAGCCCCGCCAAAAGATGGTGGTAATGGCGCTGTATTGGTATTATTAAAAAAGAATAAGCCT
GATAGCGAGTAA

Upstream 100 bases:

>100_bases
AAGTGAGATAGTTTAGATAAAGCCAATATGAAAATAGTCATTATCTTTATTACTTACTTAATTAATCATTTATTCACTAA
CCAACGATACATTAATTATT

Downstream 100 bases:

>100_bases
GCTCTTTGGTTTAGGAACAAAAAAGGACTGCAAATAAGCAGTCTTTTTTTATAGCTGTATTTAACCTATATTCAGTAGGT
AAATTTAATTATTTAGGACA

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MSNSLFSKEMQDQLKELKGQLSKGRDTVSPDGDDGKPTEPVSLLTQKQVKKTVKQMDSEHIDDDKVLFMQAMNGVNQLDD
KNVRSPANAAKAKKPDAATLSKRAAAQGGEASDLGAGLSDMQALLNPVAGEAYLSYKNPTLQNKIFTQLKQGKLRWYDAV
DIHGCTIEEARVAMTQLLSQAKQNNETSVKIVHGKGSEAILKTCVNGWLRQLPEVLAFCSAPPKDGGNGAVLVLLKKNKP
DSE

Sequences:

>Translated_243_residues
MSNSLFSKEMQDQLKELKGQLSKGRDTVSPDGDDGKPTEPVSLLTQKQVKKTVKQMDSEHIDDDKVLFMQAMNGVNQLDD
KNVRSPANAAKAKKPDAATLSKRAAAQGGEASDLGAGLSDMQALLNPVAGEAYLSYKNPTLQNKIFTQLKQGKLRWYDAV
DIHGCTIEEARVAMTQLLSQAKQNNETSVKIVHGKGSEAILKTCVNGWLRQLPEVLAFCSAPPKDGGNGAVLVLLKKNKP
DSE
>Mature_242_residues
SNSLFSKEMQDQLKELKGQLSKGRDTVSPDGDDGKPTEPVSLLTQKQVKKTVKQMDSEHIDDDKVLFMQAMNGVNQLDDK
NVRSPANAAKAKKPDAATLSKRAAAQGGEASDLGAGLSDMQALLNPVAGEAYLSYKNPTLQNKIFTQLKQGKLRWYDAVD
IHGCTIEEARVAMTQLLSQAKQNNETSVKIVHGKGSEAILKTCVNGWLRQLPEVLAFCSAPPKDGGNGAVLVLLKKNKPD
SE

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=183, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788671, Length=176, Percent_Identity=28.4090909090909, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 26318; Mature: 26187

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSLFSKEMQDQLKELKGQLSKGRDTVSPDGDDGKPTEPVSLLTQKQVKKTVKQMDSEH
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
IDDDKVLFMQAMNGVNQLDDKNVRSPANAAKAKKPDAATLSKRAAAQGGEASDLGAGLSD
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHCCCHHH
MQALLNPVAGEAYLSYKNPTLQNKIFTQLKQGKLRWYDAVDIHGCTIEEARVAMTQLLSQ
HHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHH
AKQNNETSVKIVHGKGSEAILKTCVNGWLRQLPEVLAFCSAPPKDGGNGAVLVLLKKNKP
HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC
DSE
CCC
>Mature Secondary Structure 
SNSLFSKEMQDQLKELKGQLSKGRDTVSPDGDDGKPTEPVSLLTQKQVKKTVKQMDSEH
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
IDDDKVLFMQAMNGVNQLDDKNVRSPANAAKAKKPDAATLSKRAAAQGGEASDLGAGLSD
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHCCCHHH
MQALLNPVAGEAYLSYKNPTLQNKIFTQLKQGKLRWYDAVDIHGCTIEEARVAMTQLLSQ
HHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHH
AKQNNETSVKIVHGKGSEAILKTCVNGWLRQLPEVLAFCSAPPKDGGNGAVLVLLKKNKP
HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC
DSE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA