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The map label for this gene is ccmH [H]

Identifier: 93006178

GI number: 93006178

Start: 1652244

End: 1652813

Strand: Direct

Name: ccmH [H]

Synonym: Pcryo_1350

Alternate gene names: 93006178

Gene position: 1652244-1652813 (Clockwise)

Preceding gene: 93006177

Following gene: 93006179

Centisome position: 54.0

GC content: 42.98

Gene sequence:

>570_bases
ATGAACGTTACTCGAATAAGAGCTCCTCAACTAAAACCCAATATAGTTTTAAAAATAGCAAGCTTAATACTAGCGTGTCT
GCTTAACATGACGGCAAACGCAGCTATTGACGTATACGATTTTGACTCACCACAGCAAGAAGCTCAGTATCGTGGATTAA
TAGAAGAGTTTCGCTGCCCAAAATGCCAAAATCAAAACCTTGCAGCCTCTGATGCACCGATTGCACAGGATCTAAAGCAA
AAAGTCTATGATTTAATTAAAGATAGACGTAGTGATGCTGAAATACGCGTCTATATGCAAGAGCGCTACGGTGACTTTAT
TAGCTACAAGCCGCCTATGCGACCATCAACATGGATCCTATGGTTTTTTCCACCACTATTATTGCTCGTCTTAATCATTG
GTTGGTTTTGGCAAAGTAAGCGTCGCCAAGTTGTTGCCCGTGGTCAAAGCGGCGTCACAGTGAACAGTACTGCTGCCTTG
ACCTCTACGGAAAAGGCTGAGCTTGATCGTCTATTATCGCAAGCTGAGAGTGTCGACCACGACATTACTAGCCTAGAGGA
CAAAAAATGA

Upstream 100 bases:

>100_bases
CCAATTGGCAACAGCGTGTTAAGCCGTGCCTGACAGTACTTAATAAGGCTAATAAGAACAACGATAGTCCTGATCTCATT
CAGGTTGAGGAGATGTGCAA

Downstream 100 bases:

>100_bases
CTCTATTTTCTACTTTTGGCTTATTTGTAACTCTAAGCTTGCTGATTGCTCTTATATTTGCGCTGATTGCTATTATGCCA
TGGCTACGAGCACCGCGTTT

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MNVTRIRAPQLKPNIVLKIASLILACLLNMTANAAIDVYDFDSPQQEAQYRGLIEEFRCPKCQNQNLAASDAPIAQDLKQ
KVYDLIKDRRSDAEIRVYMQERYGDFISYKPPMRPSTWILWFFPPLLLLVLIIGWFWQSKRRQVVARGQSGVTVNSTAAL
TSTEKAELDRLLSQAESVDHDITSLEDKK

Sequences:

>Translated_189_residues
MNVTRIRAPQLKPNIVLKIASLILACLLNMTANAAIDVYDFDSPQQEAQYRGLIEEFRCPKCQNQNLAASDAPIAQDLKQ
KVYDLIKDRRSDAEIRVYMQERYGDFISYKPPMRPSTWILWFFPPLLLLVLIIGWFWQSKRRQVVARGQSGVTVNSTAAL
TSTEKAELDRLLSQAESVDHDITSLEDKK
>Mature_189_residues
MNVTRIRAPQLKPNIVLKIASLILACLLNMTANAAIDVYDFDSPQQEAQYRGLIEEFRCPKCQNQNLAASDAPIAQDLKQ
KVYDLIKDRRSDAEIRVYMQERYGDFISYKPPMRPSTWILWFFPPLLLLVLIIGWFWQSKRRQVVARGQSGVTVNSTAAL
TSTEKAELDRLLSQAESVDHDITSLEDKK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=113, Percent_Identity=46.0176991150442, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790512, Length=82, Percent_Identity=41.4634146341463, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 21616; Mature: 21616

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTRIRAPQLKPNIVLKIASLILACLLNMTANAAIDVYDFDSPQQEAQYRGLIEEFRCP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCC
KCQNQNLAASDAPIAQDLKQKVYDLIKDRRSDAEIRVYMQERYGDFISYKPPMRPSTWIL
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCCCCCCCCCCCCCCHH
WFFPPLLLLVLIIGWFWQSKRRQVVARGQSGVTVNSTAALTSTEKAELDRLLSQAESVDH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHCCHHHHHHHHHHHHHHHHHH
DITSLEDKK
HHHHCCCCC
>Mature Secondary Structure
MNVTRIRAPQLKPNIVLKIASLILACLLNMTANAAIDVYDFDSPQQEAQYRGLIEEFRCP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCC
KCQNQNLAASDAPIAQDLKQKVYDLIKDRRSDAEIRVYMQERYGDFISYKPPMRPSTWIL
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCCCCCCCCCCCCCCHH
WFFPPLLLLVLIIGWFWQSKRRQVVARGQSGVTVNSTAALTSTEKAELDRLLSQAESVDH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHCCHHHHHHHHHHHHHHHHHH
DITSLEDKK
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]