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The map label for this gene is yisV [H]

Identifier: 93006163

GI number: 93006163

Start: 1633295

End: 1634674

Strand: Reverse

Name: yisV [H]

Synonym: Pcryo_1335

Alternate gene names: 93006163

Gene position: 1634674-1633295 (Counterclockwise)

Preceding gene: 93006165

Following gene: 93006161

Centisome position: 53.42

GC content: 48.12

Gene sequence:

>1380_bases
ATGAAGCATCAATTAACACGAATTGAAATCGTCATGGCTGACGTTAAAGAAAAGATAGCAACCGTCGTCTATATGCCTGG
AACACGCCTACCCTCTGTAAGGGCAGCGGCGAACAGTTACGGGTTTTCACCGTCAACGGTGGTTGAAGCTTACGAGCGCT
TGCAAACAGAAGGTACTATTTACTCGCGTCCTGGCGCAGGGTTCTATGTCGCAGAGACGACAGCGCCGCTTTCATTAACA
GAGTCAGGACACAATCTTGATCGCGCAATAGATCCACTCTGGGTGTCGCGGCAATCGCTTGAGCCATCCGATAATGTACT
AAAGCCTGGCTGTGGTTGGCTGCCACCCGATTGGTTGTTTGAGGAGGGTATGCGCCGCGGTTTACGACATGCGGCAAGAG
GTGACGCTACCGTTATCAGCGAGTATGCAACGCCGCTAGGATTGCCCGCATTGCGCCAATTACTGACACGGCGTATGGCA
GGACTGGGAATCGATGCGCAGCCTTCACAAGTAATGCTGATAGAGTCTGGCACGCAAGCGATAGATTTAATCCTTCGCTT
TTTATTGACCGCAGGCGATACGGTAGTAGTGGATGACCCTTGTTATTTTAATTTTCGAGCGCTATTGCGTGCTCATAGAG
TCAAAGTCATTGGCGTGCCTTATACGCCGAGTGGTCCAGATATAGAGACCTTTGCAAAAATTTTAGAAGAACACAAACCT
CGCCTATACATTACCAATGCCGCCATCCATAACCCTACCGGTGCAACCTTATCGCATGCTACGGCGTACCAAATATTGCA
ATTGGCTCAGGCATCTGGTTTATATATTATCGAAGATGATATTTTTGCTGATTTTGAAGTCAAACCTGCGCCACGGCTTG
CGGCATTAGACGGCTTATCACGCGTGTTTTATATTGGCAGCTTTTCTAAAACCTTATCGGCATCTTTGCGCTGCGGTTAT
ATTGCAGCTCCTAACGAGTGGGTTGAGAGTTTGCTTGACTTGAAAATAGCGACGGGATTTGGCGGCGGTCAGCTGGCAGC
GGCCGTGGTGTTGTCAGCGTTAACGGATAGCGGTTATCGCAAACATATGAGCATGATGCATACGCGACTTGCAAGCGCAC
GTTCTCAAACGCTGCCACGCTTGGAAAAATTAGGAATTGTGCCGTGGTTACTACCACAAGCAGGGATGTTCCTTTGGTGC
CGCTTGCCTGACAATAATAGTGCAACCGAACTGGCTAATCGTTGTTTGTCACAAGGTGTAGTCTTAGCACCAGGCAATGC
TTTTAGTCAATCAAAAAACGCTGAGAACTTTATGCGTTTTAATGTGGCACAAGCTACAGATTCACGTATATTTAAAGTGT
TGGCTCAAGCGTTGGTATAG

Upstream 100 bases:

>100_bases
TCTATATACAATCTCGTACAATTGGACAGAACTGTTTGGCATATAAAACCCATACAGTTCTTCGATCGAATTTATATATT
CATGGGTTCACTTGAAAAAT

Downstream 100 bases:

>100_bases
CCAACAATACTTAGAAGTTTTTATATATTTGATAAATTATCCAATATGGCTGCTAACCATGCGTTATTGTTTCCAATATA
TTGGTGGCCACACTCTATTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MKHQLTRIEIVMADVKEKIATVVYMPGTRLPSVRAAANSYGFSPSTVVEAYERLQTEGTIYSRPGAGFYVAETTAPLSLT
ESGHNLDRAIDPLWVSRQSLEPSDNVLKPGCGWLPPDWLFEEGMRRGLRHAARGDATVISEYATPLGLPALRQLLTRRMA
GLGIDAQPSQVMLIESGTQAIDLILRFLLTAGDTVVVDDPCYFNFRALLRAHRVKVIGVPYTPSGPDIETFAKILEEHKP
RLYITNAAIHNPTGATLSHATAYQILQLAQASGLYIIEDDIFADFEVKPAPRLAALDGLSRVFYIGSFSKTLSASLRCGY
IAAPNEWVESLLDLKIATGFGGGQLAAAVVLSALTDSGYRKHMSMMHTRLASARSQTLPRLEKLGIVPWLLPQAGMFLWC
RLPDNNSATELANRCLSQGVVLAPGNAFSQSKNAENFMRFNVAQATDSRIFKVLAQALV

Sequences:

>Translated_459_residues
MKHQLTRIEIVMADVKEKIATVVYMPGTRLPSVRAAANSYGFSPSTVVEAYERLQTEGTIYSRPGAGFYVAETTAPLSLT
ESGHNLDRAIDPLWVSRQSLEPSDNVLKPGCGWLPPDWLFEEGMRRGLRHAARGDATVISEYATPLGLPALRQLLTRRMA
GLGIDAQPSQVMLIESGTQAIDLILRFLLTAGDTVVVDDPCYFNFRALLRAHRVKVIGVPYTPSGPDIETFAKILEEHKP
RLYITNAAIHNPTGATLSHATAYQILQLAQASGLYIIEDDIFADFEVKPAPRLAALDGLSRVFYIGSFSKTLSASLRCGY
IAAPNEWVESLLDLKIATGFGGGQLAAAVVLSALTDSGYRKHMSMMHTRLASARSQTLPRLEKLGIVPWLLPQAGMFLWC
RLPDNNSATELANRCLSQGVVLAPGNAFSQSKNAENFMRFNVAQATDSRIFKVLAQALV
>Mature_459_residues
MKHQLTRIEIVMADVKEKIATVVYMPGTRLPSVRAAANSYGFSPSTVVEAYERLQTEGTIYSRPGAGFYVAETTAPLSLT
ESGHNLDRAIDPLWVSRQSLEPSDNVLKPGCGWLPPDWLFEEGMRRGLRHAARGDATVISEYATPLGLPALRQLLTRRMA
GLGIDAQPSQVMLIESGTQAIDLILRFLLTAGDTVVVDDPCYFNFRALLRAHRVKVIGVPYTPSGPDIETFAKILEEHKP
RLYITNAAIHNPTGATLSHATAYQILQLAQASGLYIIEDDIFADFEVKPAPRLAALDGLSRVFYIGSFSKTLSASLRCGY
IAAPNEWVESLLDLKIATGFGGGQLAAAVVLSALTDSGYRKHMSMMHTRLASARSQTLPRLEKLGIVPWLLPQAGMFLWC
RLPDNNSATELANRCLSQGVVLAPGNAFSQSKNAENFMRFNVAQATDSRIFKVLAQALV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=365, Percent_Identity=26.5753424657534, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI33469970, Length=365, Percent_Identity=26.5753424657534, Blast_Score=113, Evalue=4e-25,
Organism=Escherichia coli, GI1787710, Length=456, Percent_Identity=27.1929824561404, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1790797, Length=470, Percent_Identity=27.4468085106383, Blast_Score=144, Evalue=1e-35,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50160; Mature: 50160

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHQLTRIEIVMADVKEKIATVVYMPGTRLPSVRAAANSYGFSPSTVVEAYERLQTEGTI
CCCCCEEHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCE
YSRPGAGFYVAETTAPLSLTESGHNLDRAIDPLWVSRQSLEPSDNVLKPGCGWLPPDWLF
EECCCCCEEEEECCCCEEECCCCCCHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHH
EEGMRRGLRHAARGDATVISEYATPLGLPALRQLLTRRMAGLGIDAQPSQVMLIESGTQA
HHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHH
IDLILRFLLTAGDTVVVDDPCYFNFRALLRAHRVKVIGVPYTPSGPDIETFAKILEEHKP
HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCC
RLYITNAAIHNPTGATLSHATAYQILQLAQASGLYIIEDDIFADFEVKPAPRLAALDGLS
EEEEEECEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCCEECCCCCCCCCHHHHHHHH
RVFYIGSFSKTLSASLRCGYIAAPNEWVESLLDLKIATGFGGGQLAAAVVLSALTDSGYR
HEEEECCHHHHHHHHCCCCEEECCHHHHHHHHHEEHCCCCCCHHHHHHHHHHHHHCCHHH
KHMSMMHTRLASARSQTLPRLEKLGIVPWLLPQAGMFLWCRLPDNNSATELANRCLSQGV
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCE
VLAPGNAFSQSKNAENFMRFNVAQATDSRIFKVLAQALV
EECCCCHHCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKHQLTRIEIVMADVKEKIATVVYMPGTRLPSVRAAANSYGFSPSTVVEAYERLQTEGTI
CCCCCEEHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCE
YSRPGAGFYVAETTAPLSLTESGHNLDRAIDPLWVSRQSLEPSDNVLKPGCGWLPPDWLF
EECCCCCEEEEECCCCEEECCCCCCHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHH
EEGMRRGLRHAARGDATVISEYATPLGLPALRQLLTRRMAGLGIDAQPSQVMLIESGTQA
HHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHH
IDLILRFLLTAGDTVVVDDPCYFNFRALLRAHRVKVIGVPYTPSGPDIETFAKILEEHKP
HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCC
RLYITNAAIHNPTGATLSHATAYQILQLAQASGLYIIEDDIFADFEVKPAPRLAALDGLS
EEEEEECEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCCEECCCCCCCCCHHHHHHHH
RVFYIGSFSKTLSASLRCGYIAAPNEWVESLLDLKIATGFGGGQLAAAVVLSALTDSGYR
HEEEECCHHHHHHHHCCCCEEECCHHHHHHHHHEEHCCCCCCHHHHHHHHHHHHHCCHHH
KHMSMMHTRLASARSQTLPRLEKLGIVPWLLPQAGMFLWCRLPDNNSATELANRCLSQGV
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCE
VLAPGNAFSQSKNAENFMRFNVAQATDSRIFKVLAQALV
EECCCCHHCCCCCCCHHHEEEHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]