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The map label for this gene is nodD3 [H]

Identifier: 93006153

GI number: 93006153

Start: 1622248

End: 1623132

Strand: Reverse

Name: nodD3 [H]

Synonym: Pcryo_1325

Alternate gene names: 93006153

Gene position: 1623132-1622248 (Counterclockwise)

Preceding gene: 93006155

Following gene: 93006147

Centisome position: 53.05

GC content: 45.2

Gene sequence:

>885_bases
ATGAATGGTATGAACCGGCTAGAGATCAAGCAGCTTAGGGTATTGCAGGCGCTGCTTGATCTACAAAACCTCTCGCAAGT
TGCGCGCAAAATGGGACTGACACAACAAGCGATTAGCGAGCAGTTGCGTAAGCTACGGGATTTGTTTGATGATCGTTTGT
TTATTCGTCAAGGCAATAGCATGGTGGCAACACCAAAAGCCTTAGCGATGCGGCAACCGATCGACGAGATATTAAAGCAG
TTGGAAGTATTGTTAGAGCCAGAGGTGTTTACGCCGCAAACCTACAAAGGCGTCTTTACGATTAGTGCAACCGACTATGC
GACGCAGGCATTATTGCCGCAGTTGTTTAGTATCACACGCCGTGAAGCGCCTAATTTAAAGCTGATAGTGAGAGATTTTG
CCTCAGACAATATCAATCAGCTGATTGCGGCGGGCGAACTTGATTTGTTGATTACTTTTCCAGAGTTTATCCCTGATAAT
TTATCGTATGTGACGCTATTTGAAGAACAGCATTTATGTGTGACGGGTTATAAAAACACCTTTGCAACAGAGATATTCAC
ACTGGCTCAAGTTGCCGCACACCCGCAGCTGGTGGTATCGCCTTCACGTGCCAATTTGCGCGGATCGCATGATCACTGGT
TTGCAGAAAAAGGGCTTAAACGCCATATTGTGATGTCAGTGCCTAGCTTTTCAGCCGTGCCAGATATCCTACACACCACC
GATATGATTGCCTTTTATCCTGCGCGACTACTACCAAATAGTAAAGTCAAAGAGATTAAAATCGAAGCATTACCGCCTAC
CTTTAAGGTAATCGCAGCATGGCATCCACGTACCAGTGACAGTGGTATACATCGCTGGTTAATTGAGCAATTACGAAATT
TATAG

Upstream 100 bases:

>100_bases
CTAATGATTACTTGAGCAATGTTGGTCAGCATAGAGTTTTATGGGTACAATTAGAAACAAGCCTTTCTTGTTTATGGTAC
AATTATTAATGGTGAGTTTT

Downstream 100 bases:

>100_bases
TTATAGGATTAGCCTGTCTTAAAGTTATCTTATTGAGCATTTAGACTAACCCTATATTTTATGCAATACTCTCAAAAGTA
GGTATAAGATGTTTATCAGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MNGMNRLEIKQLRVLQALLDLQNLSQVARKMGLTQQAISEQLRKLRDLFDDRLFIRQGNSMVATPKALAMRQPIDEILKQ
LEVLLEPEVFTPQTYKGVFTISATDYATQALLPQLFSITRREAPNLKLIVRDFASDNINQLIAAGELDLLITFPEFIPDN
LSYVTLFEEQHLCVTGYKNTFATEIFTLAQVAAHPQLVVSPSRANLRGSHDHWFAEKGLKRHIVMSVPSFSAVPDILHTT
DMIAFYPARLLPNSKVKEIKIEALPPTFKVIAAWHPRTSDSGIHRWLIEQLRNL

Sequences:

>Translated_294_residues
MNGMNRLEIKQLRVLQALLDLQNLSQVARKMGLTQQAISEQLRKLRDLFDDRLFIRQGNSMVATPKALAMRQPIDEILKQ
LEVLLEPEVFTPQTYKGVFTISATDYATQALLPQLFSITRREAPNLKLIVRDFASDNINQLIAAGELDLLITFPEFIPDN
LSYVTLFEEQHLCVTGYKNTFATEIFTLAQVAAHPQLVVSPSRANLRGSHDHWFAEKGLKRHIVMSVPSFSAVPDILHTT
DMIAFYPARLLPNSKVKEIKIEALPPTFKVIAAWHPRTSDSGIHRWLIEQLRNL
>Mature_294_residues
MNGMNRLEIKQLRVLQALLDLQNLSQVARKMGLTQQAISEQLRKLRDLFDDRLFIRQGNSMVATPKALAMRQPIDEILKQ
LEVLLEPEVFTPQTYKGVFTISATDYATQALLPQLFSITRREAPNLKLIVRDFASDNINQLIAAGELDLLITFPEFIPDN
LSYVTLFEEQHLCVTGYKNTFATEIFTLAQVAAHPQLVVSPSRANLRGSHDHWFAEKGLKRHIVMSVPSFSAVPDILHTT
DMIAFYPARLLPNSKVKEIKIEALPPTFKVIAAWHPRTSDSGIHRWLIEQLRNL

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=290, Percent_Identity=20.6896551724138, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1790147, Length=301, Percent_Identity=24.5847176079734, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33420; Mature: 33420

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGMNRLEIKQLRVLQALLDLQNLSQVARKMGLTQQAISEQLRKLRDLFDDRLFIRQGNS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCC
MVATPKALAMRQPIDEILKQLEVLLEPEVFTPQTYKGVFTISATDYATQALLPQLFSITR
EEECHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH
REAPNLKLIVRDFASDNINQLIAAGELDLLITFPEFIPDNLSYVTLFEEQHLCVTGYKNT
CCCCCCEEEEEHHCCCCHHHHHHCCCEEEEEECHHHCCCCCEEEEEECCCCEEEECCCHH
FATEIFTLAQVAAHPQLVVSPSRANLRGSHDHWFAEKGLKRHIVMSVPSFSAVPDILHTT
HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHH
DMIAFYPARLLPNSKVKEIKIEALPPTFKVIAAWHPRTSDSGIHRWLIEQLRNL
HHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNGMNRLEIKQLRVLQALLDLQNLSQVARKMGLTQQAISEQLRKLRDLFDDRLFIRQGNS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCC
MVATPKALAMRQPIDEILKQLEVLLEPEVFTPQTYKGVFTISATDYATQALLPQLFSITR
EEECHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH
REAPNLKLIVRDFASDNINQLIAAGELDLLITFPEFIPDNLSYVTLFEEQHLCVTGYKNT
CCCCCCEEEEEHHCCCCHHHHHHCCCEEEEEECHHHCCCCCEEEEEECCCCEEEECCCHH
FATEIFTLAQVAAHPQLVVSPSRANLRGSHDHWFAEKGLKRHIVMSVPSFSAVPDILHTT
HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHH
DMIAFYPARLLPNSKVKEIKIEALPPTFKVIAAWHPRTSDSGIHRWLIEQLRNL
HHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2215216 [H]