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The map label for this gene is yhcS [C]

Identifier: 93006100

GI number: 93006100

Start: 1542971

End: 1543882

Strand: Reverse

Name: yhcS [C]

Synonym: Pcryo_1272

Alternate gene names: 93006100

Gene position: 1543882-1542971 (Counterclockwise)

Preceding gene: 93006103

Following gene: 93006098

Centisome position: 50.46

GC content: 44.08

Gene sequence:

>912_bases
ATGGATAGAATCGATGCGATGCGTGCCTTTGTGGCAGTGGTGACCGAAGGCAGCTTTAGTAATGCGGCAAATACCTTGCA
GCTGTCACCGCAGTTGGTAAGCAAATATGTCTCTAAGTTGGAGGAGCAGCTAAATAGTCGCCTGCTTAATCGCACCACTC
GTAAAGTCAGCCTTACCGAAGCTGGTAGTCATTACTTCGGACATGCACAACAGATTTTACTTAGCATTGATGATATGGAA
TCAAAATTAGGTGGTTTACAACAGAATCCCAAAGGCGTCTTAAGAATCAGTGCACCAGTATCGTTTGCCTTAAAACATAT
GGCTAAGTTAATCACTGACTTTCAGATACATTATCCATTGGTCAAAGTCGACCTACAATTGACTGATCGCAAAGTCGATA
TTGTCGAGGAGGGTTTCGATGTGGCCTTGCGTATCGGGCAGCTAAAAAGCTCGTCATTGATTGCCAAGAAGGTCGCACCC
ATTCGTGTGATGTTATGCGCTGCACCTGATTACCTGAACAAACATGGCACGCCTACTCAACCTGAAGATATTGCCGAACA
CCGCTATTTGCATTACAGCTATATGAATATGGATGGTAAGGACGATATCTACCAATTATTAAAAGCAAAATACCTCAAGC
AAGGTAGCGAGCTTCGTAGTAATAATGGTGATGTATTGGTGGACGCGGCTATTGCAGGCGCAGGAATAGTATTACAGCCG
ACTTTTATTATCAGCGAAGCGCTTAGTAGTGGCAAACTAGTCGTAGTGTTGCCAAAACTTGAGCCTGAGGCTTTGGGCTT
ATATGCAGTCTATGCTCATAGAAAATTGCTACCACATAAAGTGAGGTGTTTTATTGATTTTGTGGAAGGCTATTATGGCA
CGCCACCGTACTGGGACGAGTCCATACCTTAG

Upstream 100 bases:

>100_bases
AGTAAAAGAGTAAGATAGATAATATTGAGTAATTAACAACATATCATTGATAATTTTTTCGGCATTTAATTTTGATGGTT
CAATAGAAATAGAGCAAAAT

Downstream 100 bases:

>100_bases
CTTTTATTGGGCTTAACGGCAATGACTCGTTTATTGAACTAGCACTCGTAAATTCTCACGCATAGGTTTATATTCTATAT
TAACACTATGATGTATTCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDRIDAMRAFVAVVTEGSFSNAANTLQLSPQLVSKYVSKLEEQLNSRLLNRTTRKVSLTEAGSHYFGHAQQILLSIDDME
SKLGGLQQNPKGVLRISAPVSFALKHMAKLITDFQIHYPLVKVDLQLTDRKVDIVEEGFDVALRIGQLKSSSLIAKKVAP
IRVMLCAAPDYLNKHGTPTQPEDIAEHRYLHYSYMNMDGKDDIYQLLKAKYLKQGSELRSNNGDVLVDAAIAGAGIVLQP
TFIISEALSSGKLVVVLPKLEPEALGLYAVYAHRKLLPHKVRCFIDFVEGYYGTPPYWDESIP

Sequences:

>Translated_303_residues
MDRIDAMRAFVAVVTEGSFSNAANTLQLSPQLVSKYVSKLEEQLNSRLLNRTTRKVSLTEAGSHYFGHAQQILLSIDDME
SKLGGLQQNPKGVLRISAPVSFALKHMAKLITDFQIHYPLVKVDLQLTDRKVDIVEEGFDVALRIGQLKSSSLIAKKVAP
IRVMLCAAPDYLNKHGTPTQPEDIAEHRYLHYSYMNMDGKDDIYQLLKAKYLKQGSELRSNNGDVLVDAAIAGAGIVLQP
TFIISEALSSGKLVVVLPKLEPEALGLYAVYAHRKLLPHKVRCFIDFVEGYYGTPPYWDESIP
>Mature_303_residues
MDRIDAMRAFVAVVTEGSFSNAANTLQLSPQLVSKYVSKLEEQLNSRLLNRTTRKVSLTEAGSHYFGHAQQILLSIDDME
SKLGGLQQNPKGVLRISAPVSFALKHMAKLITDFQIHYPLVKVDLQLTDRKVDIVEEGFDVALRIGQLKSSSLIAKKVAP
IRVMLCAAPDYLNKHGTPTQPEDIAEHRYLHYSYMNMDGKDDIYQLLKAKYLKQGSELRSNNGDVLVDAAIAGAGIVLQP
TFIISEALSSGKLVVVLPKLEPEALGLYAVYAHRKLLPHKVRCFIDFVEGYYGTPPYWDESIP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=32.6599326599327, Blast_Score=174, Evalue=9e-45,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=32.5423728813559, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=32.3333333333333, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=34.006734006734, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=32.1678321678322, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=31.2056737588652, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=30.6122448979592, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789173, Length=253, Percent_Identity=28.0632411067194, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788706, Length=257, Percent_Identity=24.124513618677, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786448, Length=259, Percent_Identity=24.3243243243243, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787879, Length=154, Percent_Identity=33.1168831168831, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786508, Length=260, Percent_Identity=24.6153846153846, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787601, Length=146, Percent_Identity=30.8219178082192, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=149, Percent_Identity=28.1879194630872, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786713, Length=271, Percent_Identity=23.9852398523985, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI145693105, Length=122, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790011, Length=299, Percent_Identity=22.0735785953177, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33728; Mature: 33728

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDAMRAFVAVVTEGSFSNAANTLQLSPQLVSKYVSKLEEQLNSRLLNRTTRKVSLTE
CCHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
AGSHYFGHAQQILLSIDDMESKLGGLQQNPKGVLRISAPVSFALKHMAKLITDFQIHYPL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHEECCE
VKVDLQLTDRKVDIVEEGFDVALRIGQLKSSSLIAKKVAPIRVMLCAAPDYLNKHGTPTQ
EEEEEEECCCCHHHHHCCCCEEEEECCCCCCHHHHHHHCCEEEEEECCCHHHHCCCCCCC
PEDIAEHRYLHYSYMNMDGKDDIYQLLKAKYLKQGSELRSNNGDVLVDAAIAGAGIVLQP
HHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEECCCCCEEEEH
TFIISEALSSGKLVVVLPKLEPEALGLYAVYAHRKLLPHKVRCFIDFVEGYYGTPPYWDE
HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
SIP
CCC
>Mature Secondary Structure
MDRIDAMRAFVAVVTEGSFSNAANTLQLSPQLVSKYVSKLEEQLNSRLLNRTTRKVSLTE
CCHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
AGSHYFGHAQQILLSIDDMESKLGGLQQNPKGVLRISAPVSFALKHMAKLITDFQIHYPL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHEECCE
VKVDLQLTDRKVDIVEEGFDVALRIGQLKSSSLIAKKVAPIRVMLCAAPDYLNKHGTPTQ
EEEEEEECCCCHHHHHCCCCEEEEECCCCCCHHHHHHHCCEEEEEECCCHHHHCCCCCCC
PEDIAEHRYLHYSYMNMDGKDDIYQLLKAKYLKQGSELRSNNGDVLVDAAIAGAGIVLQP
HHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEECCCCCEEEEH
TFIISEALSSGKLVVVLPKLEPEALGLYAVYAHRKLLPHKVRCFIDFVEGYYGTPPYWDE
HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
SIP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]