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The map label for this gene is araC [C]

Identifier: 93006048

GI number: 93006048

Start: 1479103

End: 1479906

Strand: Direct

Name: araC [C]

Synonym: Pcryo_1220

Alternate gene names: 93006048

Gene position: 1479103-1479906 (Clockwise)

Preceding gene: 93006037

Following gene: 93006051

Centisome position: 48.34

GC content: 42.41

Gene sequence:

>804_bases
ATGATGGATGTAATAGAAGAGACGGGGCTTGTCGGTTTTACTGCCTCGTTGCGGCAGAGCATGGCTACTTATTATTCAGA
AAGTAGTGAGGCATTTATTGGTAATGTCTCATTATTACTGCCTCTACTTGATACTTTAAAGAATGTGGTGTTTTTTGTGA
AAGATGAGCAGGCGCGCTACCAGCTGGCAAACAAAACATTGTTAAAGCGTTGTAAGTTAAGTCAGCATAGTGACATCGTA
GGTTTTACCACTGAGCAGGTGTTTTCTCATCAGCAGAGTAAGGATTATATCTTGCAGGATATGAAAGTGTTGCGAGATGG
GAAGTCAATCGTTGATAATTTAGAGCTACACAGTTATGCATCTGGTCAGTTAGGCTGGTGTATTACCAATAAACTGCCTA
TCTATAATGACAATCAACAAGTGGTCGCGATGGTTGGGATATCCGTCGATATTGATGAGGATAACGAACGCATTTTACGT
AAACACGCGAGACTGGCTGACGTAGCACAGTTCGTACGCGGTAATCTGGATCAGAAAATCAATATAGCAGAACTGGCGGA
GCTGTCACATTTTAGCTTATCGCAGTTAGAGCGCACCTTTAAAGCAGTGCTAAATATGTCGCCTTTACAGTTTGTACAAA
AGCTGAGATTAGAATATGCGGTTAAGCTATTAGCCATGCCTGAGATGTCAGTCACTCAAATATCGTTGAACTGCGGCTAT
AGCGATCATAGTGCCTTTAGCCGCCAGTTCAAACAGTTTACGGGCTTGTCACCCAGCCAATTTCGCCAAACGCATTTATC
ATGA

Upstream 100 bases:

>100_bases
TTAAGTAGTGTTTTGATAGAGATTTACTATCTTTAGCAAGGGACGAGCAAATAGTATTGCTTGTTAATGACTGGGATTGA
GATGGCAGGGATGACATAGG

Downstream 100 bases:

>100_bases
AAAAGTTAAATCAGTAACCAACGACTGCCGCATCGACAATACGTGGATCTGAAGATCCATACACGCCATTTGGGGTAACC
ATAATAGACTGTGTTGATCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcriptional Regulator With PAS/PAC Sensors AraC Family; Transcriptional Regulator AraC Family Protein; Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; Activator Protein MtlR; AraC Family Transcription Regulator; L-Rhamnose Operon Transcriptional Activator; Transcriptional Regulator AraC; HTH-Type Transcriptional Regulator; Transcriptional Regulator Arac Family; Transcriptional Regulator N/C Terminus AraC Family Protein; PAS Fold-4 Domain Protein; AraC Family Regulatory Helix-Turn-Helix Protein; PAS Sensor Protein; AraC Family Regulatory Protein; AraC/XylS Family Transcriptional Regulator; Proline Utilization Regulator; Regulatory Protein; Response Regulator Receiver; Two Component Transcriptional Regulator AraC Family; Methylphosphotriester-DNA Alkyltransferase; AraC-Type Trancriptional Regulator; Transcriptional Regulator Protein; Ada Regulatory Protein; AdaA Protein; Transcriptional Regulator Transcription Regulator Protein; AraC Family Transcription Regulator Protein; AraC-Type Transcriptional Regulator Domain Protein; PAS Fold Family Protein; Transcriptional Regulator N/C Terminus AraC Family; Two Component AraC Family Transcriptional Regulator; Xyls/AraC-Type Transcriptional Activator

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MMDVIEETGLVGFTASLRQSMATYYSESSEAFIGNVSLLLPLLDTLKNVVFFVKDEQARYQLANKTLLKRCKLSQHSDIV
GFTTEQVFSHQQSKDYILQDMKVLRDGKSIVDNLELHSYASGQLGWCITNKLPIYNDNQQVVAMVGISVDIDEDNERILR
KHARLADVAQFVRGNLDQKINIAELAELSHFSLSQLERTFKAVLNMSPLQFVQKLRLEYAVKLLAMPEMSVTQISLNCGY
SDHSAFSRQFKQFTGLSPSQFRQTHLS

Sequences:

>Translated_267_residues
MMDVIEETGLVGFTASLRQSMATYYSESSEAFIGNVSLLLPLLDTLKNVVFFVKDEQARYQLANKTLLKRCKLSQHSDIV
GFTTEQVFSHQQSKDYILQDMKVLRDGKSIVDNLELHSYASGQLGWCITNKLPIYNDNQQVVAMVGISVDIDEDNERILR
KHARLADVAQFVRGNLDQKINIAELAELSHFSLSQLERTFKAVLNMSPLQFVQKLRLEYAVKLLAMPEMSVTQISLNCGY
SDHSAFSRQFKQFTGLSPSQFRQTHLS
>Mature_267_residues
MMDVIEETGLVGFTASLRQSMATYYSESSEAFIGNVSLLLPLLDTLKNVVFFVKDEQARYQLANKTLLKRCKLSQHSDIV
GFTTEQVFSHQQSKDYILQDMKVLRDGKSIVDNLELHSYASGQLGWCITNKLPIYNDNQQVVAMVGISVDIDEDNERILR
KHARLADVAQFVRGNLDQKINIAELAELSHFSLSQLERTFKAVLNMSPLQFVQKLRLEYAVKLLAMPEMSVTQISLNCGY
SDHSAFSRQFKQFTGLSPSQFRQTHLS

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30309; Mature: 30309

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDVIEETGLVGFTASLRQSMATYYSESSEAFIGNVSLLLPLLDTLKNVVFFVKDEQARY
CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCHHHHH
QLANKTLLKRCKLSQHSDIVGFTTEQVFSHQQSKDYILQDMKVLRDGKSIVDNLELHSYA
HHHHHHHHHHHCCCCCCCEECCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCC
SGQLGWCITNKLPIYNDNQQVVAMVGISVDIDEDNERILRKHARLADVAQFVRGNLDQKI
CCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCC
NIAELAELSHFSLSQLERTFKAVLNMSPLQFVQKLRLEYAVKLLAMPEMSVTQISLNCGY
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
SDHSAFSRQFKQFTGLSPSQFRQTHLS
CHHHHHHHHHHHHHCCCHHHHHHHCCC
>Mature Secondary Structure
MMDVIEETGLVGFTASLRQSMATYYSESSEAFIGNVSLLLPLLDTLKNVVFFVKDEQARY
CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCHHHHH
QLANKTLLKRCKLSQHSDIVGFTTEQVFSHQQSKDYILQDMKVLRDGKSIVDNLELHSYA
HHHHHHHHHHHCCCCCCCEECCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCC
SGQLGWCITNKLPIYNDNQQVVAMVGISVDIDEDNERILRKHARLADVAQFVRGNLDQKI
CCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCC
NIAELAELSHFSLSQLERTFKAVLNMSPLQFVQKLRLEYAVKLLAMPEMSVTQISLNCGY
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
SDHSAFSRQFKQFTGLSPSQFRQTHLS
CHHHHHHHHHHHHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA