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The map label for this gene is ynjC [H]

Identifier: 93005803

GI number: 93005803

Start: 1160861

End: 1162687

Strand: Reverse

Name: ynjC [H]

Synonym: Pcryo_0975

Alternate gene names: 93005803

Gene position: 1162687-1160861 (Counterclockwise)

Preceding gene: 93005804

Following gene: 93005802

Centisome position: 38.0

GC content: 46.14

Gene sequence:

>1827_bases
ATGAAAAAATCCGTTCATAAAAGCAAGGTTAATACTGATAACAACAATATTAATGGCGTGAATACTGATACTCTTAATGC
TGCTATCATTCATTCTAATTTAAGCCATCAAATAGCCGCGACTTGTAAAACTGACCTTTTTACTCGTTTAGTGACCCTAA
GCCCCAGTCTTTTACTAATACTCCTTATTTTGCCTGTATTAGGAGGTTTGATAAGCGTCATCCTGCCAGCGTTTGGCTGG
GTGCCTGCTCTAGAAACAACGACCTTTGGTCTACAAGGATTTAAAGCGCTGGGTCAAACACTGGGGCTTGAGCAAATGGT
TGCGCTTAGTGTGGCGACCGGATTTCTCAGCACCCTACTCGCCTTTGTCATAGCGATTATGATATTGGCGACGTTTTTTA
ATAGTCCTTGGCTCACACGTATTGAACGTTTGCTTAGCCCTATTTTAGTGATCCCGCATGCCGCAGCGGCGATTGCCGTT
GGGTTTTTGATTGTACCCTCTGGCATGATGGCACGAATGATATCGCCATGGCTCAGTGATTGGGAGCTGGCACCACAGGG
GATACTACCGCATGACCCTTATGGCATTAGTATCATCTTAGGTCTAGTACTCAAAGAGCTGCCTTTTCTATTGTTAATGG
CACTTGGCGTATTCGCACAGCCTGAGCTTGGTAAGAAGCTGCGCCAACAATATCAAGTTGCCCTAAACTTAGGCTACTAT
CCCATTACTGCCTTTTTTAAAGCAGTATTTCCTATTTTGTACCCCTTCTTGCGTTTGCCTATATTGGCAGTCCTCGCTTA
CGCCAGTGCCAGTGTTGAGATGCCATTAATTTTAGGACCCAATACCCCACCCACGCTTGCTGTCACTATCATGCAGTGGT
TCAATGATGTTGATTTGAACTTACGTATCAAAGCCTCGGCTGGGGCAATATTACAGCTACTACTGACAGGCAGCTTAATT
GCATTATGGCTGGGCGGTGAGCGTATGGTCAAAGCGCTATGCAGTGACGCATTGGTTAATGGAAAACGCCAGTATAAGGA
TGTTATTTGGCAGAAACTCACTGCAAGCGCCACAGTATTCATCATAGGGTTTATCGCCCTCTCGCTCATTGGTCTGCTGA
TGTGGTCTTTAGCTGGCTATTGGCGCTTCCCTGCCGCCCTGCCAGAGCAGCTCGTACTATTACACTTTCAAAGCGCCTTG
ATGCAAATAAGCACACCATTATTTAACACCCTTGCCCTTGGTATCGTCTCCACCCTTTTTGCTATTGCCATAACGGTACT
GTGCTTAGAGGCAGAGCAGTTAAGCAATAAACCCATCTCAAATTTTACCAGCTTGATTATTTACCTGCCACTTCTGGTGC
CGAGCATTGCTTTCTTATTTGGCTTGGTGTGGTTACAGCAACTTGTCCATAACCAAGCGGCATTTTTTAACGTCGCTTTT
ACCCACTTCTTATTTGTACTGCCCTATGTATTTTTATCCCTTGCCAGCAGCTATAGAAGGTTAGATAAGCGCTTTGCCAC
TGTAGCAGCCAGTCTTGGAGCGCCGCCTATGAGAGTATTCTTCCAAGTTAAGTTACCGCAGTTATTTGCACCGCTACTCA
TCGCAATGGCACTAGGATTGGCGGTGAGTTTTGGTCAATATCTGCCAACGTTACTCACGGGCGGCGGACGTATTGCTACC
ATTACGACCGAAGCGGTGACGCTTGCTAATGGTGCCAGCCGCCGTACCAGCGCCGTATATGCCATTATACAAATGGGGTT
ACCACTGATTGGCTTTATGGTGGCATGGCTGCTACCGAAGTATTTTTTCAGAAGTGGCGTGCGTTAG

Upstream 100 bases:

>100_bases
CCCTACCTTTTGATGCTATCAAACGAACCGTCAGTGAACCACACCCCAGCTGGGTTGACGCCATTATGCAAGGTTGGCAA
GCACGCTACGGGGTTAGCGA

Downstream 100 bases:

>100_bases
AATGTTCAATCATAAAAAAATTTTTAAACTTCATTTATCTGTGTCTCTTTTATTTTGAACTGAAGATTTTTTTAACTGGC
TATATTTTTAATTGACTACA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 608; Mature: 608

Protein sequence:

>608_residues
MKKSVHKSKVNTDNNNINGVNTDTLNAAIIHSNLSHQIAATCKTDLFTRLVTLSPSLLLILLILPVLGGLISVILPAFGW
VPALETTTFGLQGFKALGQTLGLEQMVALSVATGFLSTLLAFVIAIMILATFFNSPWLTRIERLLSPILVIPHAAAAIAV
GFLIVPSGMMARMISPWLSDWELAPQGILPHDPYGISIILGLVLKELPFLLLMALGVFAQPELGKKLRQQYQVALNLGYY
PITAFFKAVFPILYPFLRLPILAVLAYASASVEMPLILGPNTPPTLAVTIMQWFNDVDLNLRIKASAGAILQLLLTGSLI
ALWLGGERMVKALCSDALVNGKRQYKDVIWQKLTASATVFIIGFIALSLIGLLMWSLAGYWRFPAALPEQLVLLHFQSAL
MQISTPLFNTLALGIVSTLFAIAITVLCLEAEQLSNKPISNFTSLIIYLPLLVPSIAFLFGLVWLQQLVHNQAAFFNVAF
THFLFVLPYVFLSLASSYRRLDKRFATVAASLGAPPMRVFFQVKLPQLFAPLLIAMALGLAVSFGQYLPTLLTGGGRIAT
ITTEAVTLANGASRRTSAVYAIIQMGLPLIGFMVAWLLPKYFFRSGVR

Sequences:

>Translated_608_residues
MKKSVHKSKVNTDNNNINGVNTDTLNAAIIHSNLSHQIAATCKTDLFTRLVTLSPSLLLILLILPVLGGLISVILPAFGW
VPALETTTFGLQGFKALGQTLGLEQMVALSVATGFLSTLLAFVIAIMILATFFNSPWLTRIERLLSPILVIPHAAAAIAV
GFLIVPSGMMARMISPWLSDWELAPQGILPHDPYGISIILGLVLKELPFLLLMALGVFAQPELGKKLRQQYQVALNLGYY
PITAFFKAVFPILYPFLRLPILAVLAYASASVEMPLILGPNTPPTLAVTIMQWFNDVDLNLRIKASAGAILQLLLTGSLI
ALWLGGERMVKALCSDALVNGKRQYKDVIWQKLTASATVFIIGFIALSLIGLLMWSLAGYWRFPAALPEQLVLLHFQSAL
MQISTPLFNTLALGIVSTLFAIAITVLCLEAEQLSNKPISNFTSLIIYLPLLVPSIAFLFGLVWLQQLVHNQAAFFNVAF
THFLFVLPYVFLSLASSYRRLDKRFATVAASLGAPPMRVFFQVKLPQLFAPLLIAMALGLAVSFGQYLPTLLTGGGRIAT
ITTEAVTLANGASRRTSAVYAIIQMGLPLIGFMVAWLLPKYFFRSGVR
>Mature_608_residues
MKKSVHKSKVNTDNNNINGVNTDTLNAAIIHSNLSHQIAATCKTDLFTRLVTLSPSLLLILLILPVLGGLISVILPAFGW
VPALETTTFGLQGFKALGQTLGLEQMVALSVATGFLSTLLAFVIAIMILATFFNSPWLTRIERLLSPILVIPHAAAAIAV
GFLIVPSGMMARMISPWLSDWELAPQGILPHDPYGISIILGLVLKELPFLLLMALGVFAQPELGKKLRQQYQVALNLGYY
PITAFFKAVFPILYPFLRLPILAVLAYASASVEMPLILGPNTPPTLAVTIMQWFNDVDLNLRIKASAGAILQLLLTGSLI
ALWLGGERMVKALCSDALVNGKRQYKDVIWQKLTASATVFIIGFIALSLIGLLMWSLAGYWRFPAALPEQLVLLHFQSAL
MQISTPLFNTLALGIVSTLFAIAITVLCLEAEQLSNKPISNFTSLIIYLPLLVPSIAFLFGLVWLQQLVHNQAAFFNVAF
THFLFVLPYVFLSLASSYRRLDKRFATVAASLGAPPMRVFFQVKLPQLFAPLLIAMALGLAVSFGQYLPTLLTGGGRIAT
ITTEAVTLANGASRRTSAVYAIIQMGLPLIGFMVAWLLPKYFFRSGVR

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=139, Percent_Identity=39.568345323741, Blast_Score=103, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 66291; Mature: 66291

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSVHKSKVNTDNNNINGVNTDTLNAAIIHSNLSHQIAATCKTDLFTRLVTLSPSLLLI
CCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHH
LLILPVLGGLISVILPAFGWVPALETTTFGLQGFKALGQTLGLEQMVALSVATGFLSTLL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
AFVIAIMILATFFNSPWLTRIERLLSPILVIPHAAAAIAVGFLIVPSGMMARMISPWLSD
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
WELAPQGILPHDPYGISIILGLVLKELPFLLLMALGVFAQPELGKKLRQQYQVALNLGYY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH
PITAFFKAVFPILYPFLRLPILAVLAYASASVEMPLILGPNTPPTLAVTIMQWFNDVDLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCE
LRIKASAGAILQLLLTGSLIALWLGGERMVKALCSDALVNGKRQYKDVIWQKLTASATVF
EEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IIGFIALSLIGLLMWSLAGYWRFPAALPEQLVLLHFQSALMQISTPLFNTLALGIVSTLF
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAITVLCLEAEQLSNKPISNFTSLIIYLPLLVPSIAFLFGLVWLQQLVHNQAAFFNVAF
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THFLFVLPYVFLSLASSYRRLDKRFATVAASLGAPPMRVFFQVKLPQLFAPLLIAMALGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEHHHHHHHHHHHHHHHHH
AVSFGQYLPTLLTGGGRIATITTEAVTLANGASRRTSAVYAIIQMGLPLIGFMVAWLLPK
HHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
YFFRSGVR
HHHHCCCC
>Mature Secondary Structure
MKKSVHKSKVNTDNNNINGVNTDTLNAAIIHSNLSHQIAATCKTDLFTRLVTLSPSLLLI
CCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHH
LLILPVLGGLISVILPAFGWVPALETTTFGLQGFKALGQTLGLEQMVALSVATGFLSTLL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
AFVIAIMILATFFNSPWLTRIERLLSPILVIPHAAAAIAVGFLIVPSGMMARMISPWLSD
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
WELAPQGILPHDPYGISIILGLVLKELPFLLLMALGVFAQPELGKKLRQQYQVALNLGYY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH
PITAFFKAVFPILYPFLRLPILAVLAYASASVEMPLILGPNTPPTLAVTIMQWFNDVDLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCE
LRIKASAGAILQLLLTGSLIALWLGGERMVKALCSDALVNGKRQYKDVIWQKLTASATVF
EEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IIGFIALSLIGLLMWSLAGYWRFPAALPEQLVLLHFQSALMQISTPLFNTLALGIVSTLF
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAITVLCLEAEQLSNKPISNFTSLIIYLPLLVPSIAFLFGLVWLQQLVHNQAAFFNVAF
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THFLFVLPYVFLSLASSYRRLDKRFATVAASLGAPPMRVFFQVKLPQLFAPLLIAMALGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEHHHHHHHHHHHHHHHHH
AVSFGQYLPTLLTGGGRIATITTEAVTLANGASRRTSAVYAIIQMGLPLIGFMVAWLLPK
HHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
YFFRSGVR
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]