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The map label for this gene is ydcJ [H]

Identifier: 93005722

GI number: 93005722

Start: 1057600

End: 1058997

Strand: Direct

Name: ydcJ [H]

Synonym: Pcryo_0894

Alternate gene names: 93005722

Gene position: 1057600-1058997 (Clockwise)

Preceding gene: 93005721

Following gene: 93005723

Centisome position: 34.56

GC content: 46.28

Gene sequence:

>1398_bases
ATGAGCAGTGATGATATCCGTCATCGTTTTTCGCTCGCTATGTCAAAGATGTATCAAAAAGAAGTGCCGCTATATACTGA
TCTTATGAATCTGGTCGCTGAAGTTAATAAGGATGTATTGGACAAGCAACCTGAGATTGCTGAACAGCTTAAGAATACTA
ATGAAATCGATAGACTCAGCATGGAGCGCCATGGAGCGATTCGATTGGGTACGGCGGCAGAGCTTATGATGATGCGTCGT
TTGTTTGCAGTTATGGGCATGCACCCGGTCGGTTACTATGACCTAGCGCCTGCTGGCGTGCCAGTGCATTCTACAGCGTT
TCGCGCGATTGATACGGCATCGCTCAATAATAGTCCGTTTCGCGTATTTACCTCATTATTGCGTTTAGATTTGATTGGCG
ATGCGACGCTCAAGCAACAAGCCCAAGCGGCATTGGATGCACGCTGTATTTTTACCGATGACGCAATCAAACTGATTAAA
ATTTATGAAAACGAGGGCGGTCTAACGAATGAGCAGGGTGAGCAATTTGTCCAAGAAGCGTTAGAGACTTTCCGCTGGCA
TGAGCAGTCGCCTATCTCGAAAGACGTATATGAGCAGTTGGCAGGTCAGCATCAACTGATTGCCGATGTGGTTGGGTTTA
AAGGACCACATATCAATCATTTGACCCCAAGGACGCTAGATATCGATGCCGTCCAACAAGGTATGCAGCGCCGAGGGATT
ACACCAAAAGCGATCATTGAGGGACCGCCACGCCGTTACTGTCCTATTCTTTTGCGCCAGACCAGTTTTAAGGCATTAGT
AGAAGCAGTAAGTTTTAAAGATGTTGAAGGTCAATATGAATCAGGTCAGCATACTGCTCGCTTTGGTGAAATTGAGCAGC
GCGGTGTAGCCCTGACCCCAAAAGGCCGTGCCCTTTACGACCAATTGCTAACCGAAGCTCGTGAAAAATTGGGCATGACC
CCAAATGAAGACAATGCTGAGCAATATTATCGATTATTAAGCGAATCTTTTGCCGCTTTTCCAGACGATTATCAGACACT
GCATCATGAGCAGCTCGCTTATTTCCTCTATCAGGTAGCTGACAAGGAAGCTTTTGCAAATCAGTTCGTGGATCCATCGT
CAAACGAGCTCTCTGCTGCTAATCTGCAAAGCCTGATTGAGCAAGATATCATTCGTATCGAGCCGATTGTTTATGAAGAC
TTTTTGCCTGTGAGTGCAGCCGGTATCTTCCAGTCCAATCTTCATAGAGATAGCGAGAACAGCTATGATGGTCAGTCCAA
TAAGCAAGAATTTGAGCAAGCCTTAGGCATGCGTGTGCAAGATGAATTGGCATTATATGCGCAGCGGCAGAACGAGAGTC
TACAAGCGTGTTTGGCCTCATTACGACAAGTGGCCTAA

Upstream 100 bases:

>100_bases
TCAAGTAGCCATCATTTTTAACTATTATTCATTTGTCATCACAAGCAGTTTAAGGAGAATAACCGTGAGTTTAGAGCATT
TAAGTTCAAACCAAAGAAAT

Downstream 100 bases:

>100_bases
AGCAACTTATGGTTAAAAGACAAAACAGTGGCGCAGTTAAAAAATTGTTTTAGGCCAGTAAGGTTTAATCCGCTTTAATG
CAGTGAAAAGGATATCAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSSDDIRHRFSLAMSKMYQKEVPLYTDLMNLVAEVNKDVLDKQPEIAEQLKNTNEIDRLSMERHGAIRLGTAAELMMMRR
LFAVMGMHPVGYYDLAPAGVPVHSTAFRAIDTASLNNSPFRVFTSLLRLDLIGDATLKQQAQAALDARCIFTDDAIKLIK
IYENEGGLTNEQGEQFVQEALETFRWHEQSPISKDVYEQLAGQHQLIADVVGFKGPHINHLTPRTLDIDAVQQGMQRRGI
TPKAIIEGPPRRYCPILLRQTSFKALVEAVSFKDVEGQYESGQHTARFGEIEQRGVALTPKGRALYDQLLTEAREKLGMT
PNEDNAEQYYRLLSESFAAFPDDYQTLHHEQLAYFLYQVADKEAFANQFVDPSSNELSAANLQSLIEQDIIRIEPIVYED
FLPVSAAGIFQSNLHRDSENSYDGQSNKQEFEQALGMRVQDELALYAQRQNESLQACLASLRQVA

Sequences:

>Translated_465_residues
MSSDDIRHRFSLAMSKMYQKEVPLYTDLMNLVAEVNKDVLDKQPEIAEQLKNTNEIDRLSMERHGAIRLGTAAELMMMRR
LFAVMGMHPVGYYDLAPAGVPVHSTAFRAIDTASLNNSPFRVFTSLLRLDLIGDATLKQQAQAALDARCIFTDDAIKLIK
IYENEGGLTNEQGEQFVQEALETFRWHEQSPISKDVYEQLAGQHQLIADVVGFKGPHINHLTPRTLDIDAVQQGMQRRGI
TPKAIIEGPPRRYCPILLRQTSFKALVEAVSFKDVEGQYESGQHTARFGEIEQRGVALTPKGRALYDQLLTEAREKLGMT
PNEDNAEQYYRLLSESFAAFPDDYQTLHHEQLAYFLYQVADKEAFANQFVDPSSNELSAANLQSLIEQDIIRIEPIVYED
FLPVSAAGIFQSNLHRDSENSYDGQSNKQEFEQALGMRVQDELALYAQRQNESLQACLASLRQVA
>Mature_464_residues
SSDDIRHRFSLAMSKMYQKEVPLYTDLMNLVAEVNKDVLDKQPEIAEQLKNTNEIDRLSMERHGAIRLGTAAELMMMRRL
FAVMGMHPVGYYDLAPAGVPVHSTAFRAIDTASLNNSPFRVFTSLLRLDLIGDATLKQQAQAALDARCIFTDDAIKLIKI
YENEGGLTNEQGEQFVQEALETFRWHEQSPISKDVYEQLAGQHQLIADVVGFKGPHINHLTPRTLDIDAVQQGMQRRGIT
PKAIIEGPPRRYCPILLRQTSFKALVEAVSFKDVEGQYESGQHTARFGEIEQRGVALTPKGRALYDQLLTEAREKLGMTP
NEDNAEQYYRLLSESFAAFPDDYQTLHHEQLAYFLYQVADKEAFANQFVDPSSNELSAANLQSLIEQDIIRIEPIVYEDF
LPVSAAGIFQSNLHRDSENSYDGQSNKQEFEQALGMRVQDELALYAQRQNESLQACLASLRQVA

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv3292 [H]

Homologues:

Organism=Escherichia coli, GI1787692, Length=457, Percent_Identity=52.9540481400438, Blast_Score=459, Evalue=1e-130,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009770 [H]

Pfam domain/function: PF07063 DUF1338 [H]

EC number: NA

Molecular weight: Translated: 52554; Mature: 52423

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSDDIRHRFSLAMSKMYQKEVPLYTDLMNLVAEVNKDVLDKQPEIAEQLKNTNEIDRLS
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHH
MERHGAIRLGTAAELMMMRRLFAVMGMHPVGYYDLAPAGVPVHSTAFRAIDTASLNNSPF
HHHCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH
RVFTSLLRLDLIGDATLKQQAQAALDARCIFTDDAIKLIKIYENEGGLTNEQGEQFVQEA
HHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEECCCEEEEEEEECCCCCCCHHHHHHHHHH
LETFRWHEQSPISKDVYEQLAGQHQLIADVVGFKGPHINHLTPRTLDIDAVQQGMQRRGI
HHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
TPKAIIEGPPRRYCPILLRQTSFKALVEAVSFKDVEGQYESGQHTARFGEIEQRGVALTP
CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEECC
KGRALYDQLLTEAREKLGMTPNEDNAEQYYRLLSESFAAFPDDYQTLHHEQLAYFLYQVA
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
DKEAFANQFVDPSSNELSAANLQSLIEQDIIRIEPIVYEDFLPVSAAGIFQSNLHRDSEN
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCCC
SYDGQSNKQEFEQALGMRVQDELALYAQRQNESLQACLASLRQVA
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSDDIRHRFSLAMSKMYQKEVPLYTDLMNLVAEVNKDVLDKQPEIAEQLKNTNEIDRLS
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHH
MERHGAIRLGTAAELMMMRRLFAVMGMHPVGYYDLAPAGVPVHSTAFRAIDTASLNNSPF
HHHCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH
RVFTSLLRLDLIGDATLKQQAQAALDARCIFTDDAIKLIKIYENEGGLTNEQGEQFVQEA
HHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEECCCEEEEEEEECCCCCCCHHHHHHHHHH
LETFRWHEQSPISKDVYEQLAGQHQLIADVVGFKGPHINHLTPRTLDIDAVQQGMQRRGI
HHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
TPKAIIEGPPRRYCPILLRQTSFKALVEAVSFKDVEGQYESGQHTARFGEIEQRGVALTP
CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEECC
KGRALYDQLLTEAREKLGMTPNEDNAEQYYRLLSESFAAFPDDYQTLHHEQLAYFLYQVA
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
DKEAFANQFVDPSSNELSAANLQSLIEQDIIRIEPIVYEDFLPVSAAGIFQSNLHRDSEN
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCCC
SYDGQSNKQEFEQALGMRVQDELALYAQRQNESLQACLASLRQVA
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]