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The map label for this gene is yjgF [C]

Identifier: 93005715

GI number: 93005715

Start: 1048736

End: 1050001

Strand: Direct

Name: yjgF [C]

Synonym: Pcryo_0887

Alternate gene names: 93005715

Gene position: 1048736-1050001 (Clockwise)

Preceding gene: 93005714

Following gene: 93005716

Centisome position: 34.27

GC content: 43.13

Gene sequence:

>1266_bases
ATGAATGATACCATCATAAAATTATCTAGAAACACGAACCGTGCGCCGATTAGCGCAACCTCAACTCAGAGCATTGCTTT
TTCTCATTACAATAATATCTCAGCGCAATTACCAATTGATCCGAAGACTGGCGCATTAGCCTTTGCTGACATCTCAGCAC
AAGCCAAACAGTGCTTGGATAATATCAAGGCGATTGTAGAAAGTACCGAGCACATCATGGATGATGTAATTAAGATTACG
GTATTTTTAAAAGATATTGCAGATATGCAGGCAGTAGATGCTGTCTATCGTTCTTTCTTTAGCGACTATTTGCCGACACG
TAACGTAGTGATGGTTGCAGAGCTGCCTATGGATAATGCGTTAGTACAAATGGATGCACTACTTTCAAATGGCGAAGGTA
CTCGTCCGCAGGCCCCTTACGAGCTCGTAAAAGTGGCAAAAAACACTGATAACGCGCCAATCGACTCTCTATCTACCCAA
ACCGTTGCTTTTTCTCATTACAATAACGTTTCAGCACAATTACCAATCGATCCTACTTCAGGGCAACTAGTAGCAGGCGG
TATAGCAGAGCAGACGGCGCAATGCCTAACCAATCTTAAGTCGATTTTGAATAGTATCGATGTCGGTATTGATGACATTG
TTAAAATAAATATTAGTCTAACCAACCTTGTTGATATCGCAGCCGTCGATGACGTCTATAGTACTTTTTTCCCAGACACG
GCTATTGCCAGAGCTGTCAATTATCTACCGGCGCGTACAGTGACTATGGTTTCAGGGTTACCTATGGCTGCTTTGGTACA
GATTGAAGCCGTGGTATCACATGGAGATGGCACACCGCCACAAGCCGTTGAAGATCGACATGGCATTGTGATTAAAACCA
ACAATACTGAGCAGGCGCCAAAGCACTCGTTAAGCACGCAGACAGTTGCTTTTTCTCACTATAATCACCTTTCGGGTCAA
TTACCTATCAATCCTAAAACGGGTAAGCTCATCGGCGGTGATATAAAGGCGCAGACCAACCAATGCTTAGAGAATATCAA
AGCCATTGTCGAGAGTATCGATCATAAAATGGATGACATCGTTAAAGTAACTATCCAACTCAAAGACATTAGCGATATTG
ACACGGTCAATGATGTTTATACCACGTTTTTTAACGATGAGTTGCCCGCTAGGACAGTATTTGGGGTTTCAGCAATCCCT
ATGGATTCATTGATACAAGTTGATGCGGTGCTCTCCAATGCCGAAGGTACGCCACCTGTAAGATAG

Upstream 100 bases:

>100_bases
AAAGATCTTAAAGCGACGACAGTGGGCTAGATGCCTGCTTCATTAATAAATATATCAACCAGCTTAGTAATTAAGCCTAT
CAAAAAGGGACTATCACGAT

Downstream 100 bases:

>100_bases
TAGTTATTCAGATTTTGCCATAACCATTGGTTTGACGCACGTTTTCTAGAGCGTCATAATCAATTTATGATTCATCACCT
AAATAAAATAAAAAGGCTTT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MNDTIIKLSRNTNRAPISATSTQSIAFSHYNNISAQLPIDPKTGALAFADISAQAKQCLDNIKAIVESTEHIMDDVIKIT
VFLKDIADMQAVDAVYRSFFSDYLPTRNVVMVAELPMDNALVQMDALLSNGEGTRPQAPYELVKVAKNTDNAPIDSLSTQ
TVAFSHYNNVSAQLPIDPTSGQLVAGGIAEQTAQCLTNLKSILNSIDVGIDDIVKINISLTNLVDIAAVDDVYSTFFPDT
AIARAVNYLPARTVTMVSGLPMAALVQIEAVVSHGDGTPPQAVEDRHGIVIKTNNTEQAPKHSLSTQTVAFSHYNHLSGQ
LPINPKTGKLIGGDIKAQTNQCLENIKAIVESIDHKMDDIVKVTIQLKDISDIDTVNDVYTTFFNDELPARTVFGVSAIP
MDSLIQVDAVLSNAEGTPPVR

Sequences:

>Translated_421_residues
MNDTIIKLSRNTNRAPISATSTQSIAFSHYNNISAQLPIDPKTGALAFADISAQAKQCLDNIKAIVESTEHIMDDVIKIT
VFLKDIADMQAVDAVYRSFFSDYLPTRNVVMVAELPMDNALVQMDALLSNGEGTRPQAPYELVKVAKNTDNAPIDSLSTQ
TVAFSHYNNVSAQLPIDPTSGQLVAGGIAEQTAQCLTNLKSILNSIDVGIDDIVKINISLTNLVDIAAVDDVYSTFFPDT
AIARAVNYLPARTVTMVSGLPMAALVQIEAVVSHGDGTPPQAVEDRHGIVIKTNNTEQAPKHSLSTQTVAFSHYNHLSGQ
LPINPKTGKLIGGDIKAQTNQCLENIKAIVESIDHKMDDIVKVTIQLKDISDIDTVNDVYTTFFNDELPARTVFGVSAIP
MDSLIQVDAVLSNAEGTPPVR
>Mature_421_residues
MNDTIIKLSRNTNRAPISATSTQSIAFSHYNNISAQLPIDPKTGALAFADISAQAKQCLDNIKAIVESTEHIMDDVIKIT
VFLKDIADMQAVDAVYRSFFSDYLPTRNVVMVAELPMDNALVQMDALLSNGEGTRPQAPYELVKVAKNTDNAPIDSLSTQ
TVAFSHYNNVSAQLPIDPTSGQLVAGGIAEQTAQCLTNLKSILNSIDVGIDDIVKINISLTNLVDIAAVDDVYSTFFPDT
AIARAVNYLPARTVTMVSGLPMAALVQIEAVVSHGDGTPPQAVEDRHGIVIKTNNTEQAPKHSLSTQTVAFSHYNHLSGQ
LPINPKTGKLIGGDIKAQTNQCLENIKAIVESIDHKMDDIVKVTIQLKDISDIDTVNDVYTTFFNDELPARTVFGVSAIP
MDSLIQVDAVLSNAEGTPPVR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=105, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=5e-16,
Organism=Escherichia coli, GI87082396, Length=123, Percent_Identity=42.2764227642276, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI87082213, Length=115, Percent_Identity=37.3913043478261, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71982068, Length=105, Percent_Identity=35.2380952380952, Blast_Score=79, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71982075, Length=105, Percent_Identity=35.2380952380952, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI25148896, Length=105, Percent_Identity=35.2380952380952, Blast_Score=78, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6320899, Length=94, Percent_Identity=37.2340425531915, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322138, Length=127, Percent_Identity=29.9212598425197, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19921376, Length=104, Percent_Identity=35.5769230769231, Blast_Score=84, Evalue=3e-16,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 45400; Mature: 45400

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDTIIKLSRNTNRAPISATSTQSIAFSHYNNISAQLPIDPKTGALAFADISAQAKQCLD
CCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEEHHHHHHHHHHH
NIKAIVESTEHIMDDVIKITVFLKDIADMQAVDAVYRSFFSDYLPTRNVVMVAELPMDNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH
LVQMDALLSNGEGTRPQAPYELVKVAKNTDNAPIDSLSTQTVAFSHYNNVSAQLPIDPTS
HHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCC
GQLVAGGIAEQTAQCLTNLKSILNSIDVGIDDIVKINISLTNLVDIAAVDDVYSTFFPDT
CCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCHH
AIARAVNYLPARTVTMVSGLPMAALVQIEAVVSHGDGTPPQAVEDRHGIVIKTNNTEQAP
HHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCC
KHSLSTQTVAFSHYNHLSGQLPINPKTGKLIGGDIKAQTNQCLENIKAIVESIDHKMDDI
CCCCCCEEEEEEHHCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCE
VKVTIQLKDISDIDTVNDVYTTFFNDELPARTVFGVSAIPMDSLIQVDAVLSNAEGTPPV
EEEEEEEECCCCCHHHHHHHHHHCCCCCCCHHEECCCCCCHHHHHHHHHHHCCCCCCCCC
R
C
>Mature Secondary Structure
MNDTIIKLSRNTNRAPISATSTQSIAFSHYNNISAQLPIDPKTGALAFADISAQAKQCLD
CCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEEHHHHHHHHHHH
NIKAIVESTEHIMDDVIKITVFLKDIADMQAVDAVYRSFFSDYLPTRNVVMVAELPMDNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH
LVQMDALLSNGEGTRPQAPYELVKVAKNTDNAPIDSLSTQTVAFSHYNNVSAQLPIDPTS
HHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCC
GQLVAGGIAEQTAQCLTNLKSILNSIDVGIDDIVKINISLTNLVDIAAVDDVYSTFFPDT
CCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCHH
AIARAVNYLPARTVTMVSGLPMAALVQIEAVVSHGDGTPPQAVEDRHGIVIKTNNTEQAP
HHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCC
KHSLSTQTVAFSHYNHLSGQLPINPKTGKLIGGDIKAQTNQCLENIKAIVESIDHKMDDI
CCCCCCEEEEEEHHCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCE
VKVTIQLKDISDIDTVNDVYTTFFNDELPARTVFGVSAIPMDSLIQVDAVLSNAEGTPPV
EEEEEEEECCCCCHHHHHHHHHHCCCCCCCHHEECCCCCCHHHHHHHHHHHCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]