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The map label for this gene is ureF

Identifier: 93005712

GI number: 93005712

Start: 1046323

End: 1047030

Strand: Direct

Name: ureF

Synonym: Pcryo_0884

Alternate gene names: 93005712

Gene position: 1046323-1047030 (Clockwise)

Preceding gene: 93005711

Following gene: 93005713

Centisome position: 34.19

GC content: 47.6

Gene sequence:

>708_bases
ATGCGCATTGATGATCCGTCAAATGCTGTGAGCGATCTAGCATTGTTAGGTTTGATGCAATTAATTAGCCCAGCATTACC
TATTGGTGCTTTTGCTTGGTCACAAGGTTTGGAAAGTGCGTTTGAGCTTGGTTGGGTCAATAATGAAGCTCAACTGGGCG
AATGGTTGGAAGGCGTTTTAGGTGACGGTTTGACGCGTTGTGAACTGCCTGTCTTAGCACGTTTACAGAGATGTTGGGCT
AATAACGACGGTGATGGTTTGGCTTTTTGGAATGACTGGCTACACGCCAATCGGGAAACGGCTGAGCTTAGCGATGAAGA
TACACGTTTGGGTCAAGCATTGATACGCTTACTAAACAGTTTAGAGTTGCAGCCACAGAAAGCGTTAGGTCATGTCGAGC
TACCAGAGGAACCAGGCTATGTCACTGTGTTTGCATGGACGGCCCATCAAAGGCAAGTACCTGTACGTCAAGCTCTATTA
GGATTTGCTTGGGGCTGGCTGGAAAATCAGCTGGCGGCTGCCTGTAAAGCCCTGCCACTCGGTCATACCGCTGCACAACG
TTTGAACGAGACGTTACGTCCGCAACTGGTAGCGGCAGTTGATAAAGCTTTAACCTTAACTGATGAGCAGTTGGGTCCGA
TTTTACCCGGCTTAGCACTGGGTAGTGCTCAACATGAAACTCAATATTCACGATTATTTCGAAGCTAA

Upstream 100 bases:

>100_bases
CAGGCTGGTCGCGAGCACTCGCACTCAAATAGTCATGCGCATTCTCACTCTAATTCTCATGACCACGACCACGATCATTC
TGAACACGACGGTCATAACC

Downstream 100 bases:

>100_bases
ATTAATACTTCGTTTTTAGATAAGGAAAATATACATGAAACATTGTTTAAGAGTAGGTGTTGGTGGTCCGGTTGGTTCTG
GAAAAACAGCTCTATTACGT

Product: urease accessory protein UreF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MRIDDPSNAVSDLALLGLMQLISPALPIGAFAWSQGLESAFELGWVNNEAQLGEWLEGVLGDGLTRCELPVLARLQRCWA
NNDGDGLAFWNDWLHANRETAELSDEDTRLGQALIRLLNSLELQPQKALGHVELPEEPGYVTVFAWTAHQRQVPVRQALL
GFAWGWLENQLAAACKALPLGHTAAQRLNETLRPQLVAAVDKALTLTDEQLGPILPGLALGSAQHETQYSRLFRS

Sequences:

>Translated_235_residues
MRIDDPSNAVSDLALLGLMQLISPALPIGAFAWSQGLESAFELGWVNNEAQLGEWLEGVLGDGLTRCELPVLARLQRCWA
NNDGDGLAFWNDWLHANRETAELSDEDTRLGQALIRLLNSLELQPQKALGHVELPEEPGYVTVFAWTAHQRQVPVRQALL
GFAWGWLENQLAAACKALPLGHTAAQRLNETLRPQLVAAVDKALTLTDEQLGPILPGLALGSAQHETQYSRLFRS
>Mature_235_residues
MRIDDPSNAVSDLALLGLMQLISPALPIGAFAWSQGLESAFELGWVNNEAQLGEWLEGVLGDGLTRCELPVLARLQRCWA
NNDGDGLAFWNDWLHANRETAELSDEDTRLGQALIRLLNSLELQPQKALGHVELPEEPGYVTVFAWTAHQRQVPVRQALL
GFAWGWLENQLAAACKALPLGHTAAQRLNETLRPQLVAAVDKALTLTDEQLGPILPGLALGSAQHETQYSRLFRS

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0830

COG function: function code O; Urease accessory protein UreF

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UREF_PSYCK (Q1QCD8)

Other databases:

- EMBL:   CP000323
- RefSeq:   YP_580149.1
- STRING:   Q1QCD8
- GeneID:   4034023
- GenomeReviews:   CP000323_GR
- KEGG:   pcr:Pcryo_0884
- NMPDR:   fig|335284.3.peg.245
- eggNOG:   COG0830
- HOGENOM:   HBG709295
- OMA:   SPQLPIG
- ProtClustDB:   CLSK717307
- BioCyc:   PCRY335284:PCRYO_0884-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01385
- InterPro:   IPR002639
- PIRSF:   PIRSF009467

Pfam domain/function: PF01730 UreF

EC number: NA

Molecular weight: Translated: 25830; Mature: 25830

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDDPSNAVSDLALLGLMQLISPALPIGAFAWSQGLESAFELGWVNNEAQLGEWLEGVL
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GDGLTRCELPVLARLQRCWANNDGDGLAFWNDWLHANRETAELSDEDTRLGQALIRLLNS
CCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
LELQPQKALGHVELPEEPGYVTVFAWTAHQRQVPVRQALLGFAWGWLENQLAAACKALPL
CCCCHHHHCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
GHTAAQRLNETLRPQLVAAVDKALTLTDEQLGPILPGLALGSAQHETQYSRLFRS
CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MRIDDPSNAVSDLALLGLMQLISPALPIGAFAWSQGLESAFELGWVNNEAQLGEWLEGVL
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GDGLTRCELPVLARLQRCWANNDGDGLAFWNDWLHANRETAELSDEDTRLGQALIRLLNS
CCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
LELQPQKALGHVELPEEPGYVTVFAWTAHQRQVPVRQALLGFAWGWLENQLAAACKALPL
CCCCHHHHCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
GHTAAQRLNETLRPQLVAAVDKALTLTDEQLGPILPGLALGSAQHETQYSRLFRS
CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA