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The map label for this gene is ypdC [H]

Identifier: 93005688

GI number: 93005688

Start: 1017122

End: 1018168

Strand: Reverse

Name: ypdC [H]

Synonym: Pcryo_0860

Alternate gene names: 93005688

Gene position: 1018168-1017122 (Counterclockwise)

Preceding gene: 93005694

Following gene: 93005686

Centisome position: 33.27

GC content: 44.13

Gene sequence:

>1047_bases
TTGCCCTACTTCAAACCGTTTAAAGTGATTATCGTTGGCTTCGATGGCGTGCTCGGCAGTGTGCTCGCTGGGGCGCTAGA
TTTATTTTCATTTACTGGCGTCAGCTGGCAACGGTTTTTGGATGAGGCAGTAGAACCAAGGTTTGACGTGCAGATTGCAA
GCTTAGGTGGCGCGGATATCAGATGCAGCAACCGTTTGATTATGCGAGCGCATTGCGATATTCAGGAAGTCACAGAGTGC
GACTTACTATTAATTCCAACCATTGGCGATTCAATTGATAAAGTATTAAGCCAAAATAGCGATTTAATTCCACACATCAA
GCGACTGGCGAATACCAAAGCGGATATCGCTAGTAATTGTAGCGGGGCTTTCTTTTTAGCAAAAGCAGGCTTGCTCGATG
GCAAAGTAGCGACCACCCATTGGGGCTATGCCAGTAAGTTTAAGGCAGATTTTCCACTGGTTGATTTGCAAGAGAATCAA
TTTGTCACTCAATCAAAGAACCATCCAAAAAGCCAGCCAAAAATTGATTCAGCACACCAATCAGGCAATATATTTTGTGC
GGCAGGTGGTAGCGCCTTTTATGACTTGGGATTGCTATTAATTGAGCGGTATTGCGGGCGTGAGATTTCTACCCAAGTGG
CAAAAACCCAGATTATTGACAGTAAAAGAGGCAATCAAAACAGCTATACCAATGTGACATTGCATAAACCACATTCAGAT
CAGCTGGTTAAGCAAGTACAAGAGTTTATCGAGGAAAACTTCAAGCAATCTATTCAAGTTAGCGGCTTGGCAGCCATGGT
AAATATCACCCCACGCACCTTAAACAGACGCTTTCAATCCTGCGTTGCGATGCGTCCGATTGAGTATATTCAAGCGGTGA
GAATTGAGCAGGCCAAGCGCTTACTAGAATTGGGCGATGTGACGATAAAATCGTTAGCGGAGCGAGTTGGTTACGATGAT
ATTTCCTCATTCACTAGGCTTTTTAAACGCGCTACTGAACTGACCCCGAAAGAATATCAGGATAAATTTTCACGCTTGGC
GATTTAA

Upstream 100 bases:

>100_bases
GACATCCTCTCTAACCTATAGTGAGTGAGTTTCAAATTACGTATCGTGCAGCTGGTGAATATTAGCCATAAATTTGCATA
TACTTAAAGGAAGCCAAATT

Downstream 100 bases:

>100_bases
CTCTATAGTAGATTTTTTAGAAGTAATACGTTGCTGCAACAAATTTATCACAGCAACAATTTTATATAATTAATTCGATA
TAAAAACGATACAACTTTTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MPYFKPFKVIIVGFDGVLGSVLAGALDLFSFTGVSWQRFLDEAVEPRFDVQIASLGGADIRCSNRLIMRAHCDIQEVTEC
DLLLIPTIGDSIDKVLSQNSDLIPHIKRLANTKADIASNCSGAFFLAKAGLLDGKVATTHWGYASKFKADFPLVDLQENQ
FVTQSKNHPKSQPKIDSAHQSGNIFCAAGGSAFYDLGLLLIERYCGREISTQVAKTQIIDSKRGNQNSYTNVTLHKPHSD
QLVKQVQEFIEENFKQSIQVSGLAAMVNITPRTLNRRFQSCVAMRPIEYIQAVRIEQAKRLLELGDVTIKSLAERVGYDD
ISSFTRLFKRATELTPKEYQDKFSRLAI

Sequences:

>Translated_348_residues
MPYFKPFKVIIVGFDGVLGSVLAGALDLFSFTGVSWQRFLDEAVEPRFDVQIASLGGADIRCSNRLIMRAHCDIQEVTEC
DLLLIPTIGDSIDKVLSQNSDLIPHIKRLANTKADIASNCSGAFFLAKAGLLDGKVATTHWGYASKFKADFPLVDLQENQ
FVTQSKNHPKSQPKIDSAHQSGNIFCAAGGSAFYDLGLLLIERYCGREISTQVAKTQIIDSKRGNQNSYTNVTLHKPHSD
QLVKQVQEFIEENFKQSIQVSGLAAMVNITPRTLNRRFQSCVAMRPIEYIQAVRIEQAKRLLELGDVTIKSLAERVGYDD
ISSFTRLFKRATELTPKEYQDKFSRLAI
>Mature_347_residues
PYFKPFKVIIVGFDGVLGSVLAGALDLFSFTGVSWQRFLDEAVEPRFDVQIASLGGADIRCSNRLIMRAHCDIQEVTECD
LLLIPTIGDSIDKVLSQNSDLIPHIKRLANTKADIASNCSGAFFLAKAGLLDGKVATTHWGYASKFKADFPLVDLQENQF
VTQSKNHPKSQPKIDSAHQSGNIFCAAGGSAFYDLGLLLIERYCGREISTQVAKTQIIDSKRGNQNSYTNVTLHKPHSDQ
LVKQVQEFIEENFKQSIQVSGLAAMVNITPRTLNRRFQSCVAMRPIEYIQAVRIEQAKRLLELGDVTIKSLAERVGYDDI
SSFTRLFKRATELTPKEYQDKFSRLAI

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788725, Length=108, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790391, Length=105, Percent_Identity=31.4285714285714, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38800; Mature: 38669

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYFKPFKVIIVGFDGVLGSVLAGALDLFSFTGVSWQRFLDEAVEPRFDVQIASLGGADI
CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEECCCCCCE
RCSNRLIMRAHCDIQEVTECDLLLIPTIGDSIDKVLSQNSDLIPHIKRLANTKADIASNC
EECCCEEEEECCCHHHHCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCC
SGAFFLAKAGLLDGKVATTHWGYASKFKADFPLVDLQENQFVTQSKNHPKSQPKIDSAHQ
CCHHHHHHCCCCCCCEEEECCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
SGNIFCAAGGSAFYDLGLLLIERYCGREISTQVAKTQIIDSKRGNQNSYTNVTLHKPHSD
CCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHH
QLVKQVQEFIEENFKQSIQVSGLAAMVNITPRTLNRRFQSCVAMRPIEYIQAVRIEQAKR
HHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
LLELGDVTIKSLAERVGYDDISSFTRLFKRATELTPKEYQDKFSRLAI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PYFKPFKVIIVGFDGVLGSVLAGALDLFSFTGVSWQRFLDEAVEPRFDVQIASLGGADI
CCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEECCCCCCE
RCSNRLIMRAHCDIQEVTECDLLLIPTIGDSIDKVLSQNSDLIPHIKRLANTKADIASNC
EECCCEEEEECCCHHHHCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCC
SGAFFLAKAGLLDGKVATTHWGYASKFKADFPLVDLQENQFVTQSKNHPKSQPKIDSAHQ
CCHHHHHHCCCCCCCEEEECCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
SGNIFCAAGGSAFYDLGLLLIERYCGREISTQVAKTQIIDSKRGNQNSYTNVTLHKPHSD
CCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHH
QLVKQVQEFIEENFKQSIQVSGLAAMVNITPRTLNRRFQSCVAMRPIEYIQAVRIEQAKR
HHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
LLELGDVTIKSLAERVGYDDISSFTRLFKRATELTPKEYQDKFSRLAI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]