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The map label for this gene is rhmR [H]

Identifier: 93005647

GI number: 93005647

Start: 965284

End: 966042

Strand: Reverse

Name: rhmR [H]

Synonym: Pcryo_0817

Alternate gene names: 93005647

Gene position: 966042-965284 (Counterclockwise)

Preceding gene: 93005651

Following gene: 93005644

Centisome position: 31.57

GC content: 44.53

Gene sequence:

>759_bases
ATGAGTACCAGCGCCGTTCCTGCTCTAGACAAAACGTTTCAAATTCTGGATTTAATCACGGCAAGCCAGCAGCCCTTAAC
GGCAGCTTATATTGCAAAAGAGTTAAAGCTACCACGTAGCTCAACGCATAATATTTTGCAAAGCTTACTTACCAAGCATG
TCATCTATAAGGATAGCGAAGGACGCTTTCACTTAGGTTCTTACTTGCTATATTGGGCGGGTAAATACGAGCAACAGCAA
GGGGTGGTGCAGTTATTTAAAGACCTTATCATGCAATATCCTATCCTGTTACAGCATACCGTCACCTTGTCCAAAATGGA
TTTGGGCGAAGTGGTTTTTTTAGCATGTCATGAAGCACCAGCTCCGCTTGGTTTTACTTTCCGTGCTGGTGTGCGCGTAC
CAGCAGTATTTTCTGCTACGGGCAAAGCTATGCTTTCAACCTTGCCCATGCATAATATCAAATCACTTTATGAAGGTATC
TTTCCAGAGCCAATGACACCTAACGGAGTTAGCAACTTCGAAACTTTAGCGGATGAAATTGCTGCCATACAGCAGAGCCG
TATTTCACTGGATGATGGGCAATTGCGTGATGGTATGTATTGCTTAGGGACTTACATACGCAATGCGTCGGGCAATGCGG
TTGCGGGTATGGCAGTCAGCTTTTTACAAGCAGAATATGAGTCCAAGCGTGCTGAGGTCAGTGCTGTACTGATTGAATTG
GCGAAGCAAATTGAACAGCGTTTAGGTTTCATTGACTAG

Upstream 100 bases:

>100_bases
ATTATAAGAACGATGCGATAGTCTTTGCAACCGTTATTTTGATAGTTCTCGAACATATTTTTTATTTTTATTGTTTAACT
GACATTTTAATAGGCAACTT

Downstream 100 bases:

>100_bases
CAATAAAACCTAAACGCTACTATTTCCTTGTTTAAAGAAAGAAAAATTTATACCAGTAGCACTTTATGATATTTGTACTT
ATTTTATTTAGGACTGACTA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSTSAVPALDKTFQILDLITASQQPLTAAYIAKELKLPRSSTHNILQSLLTKHVIYKDSEGRFHLGSYLLYWAGKYEQQQ
GVVQLFKDLIMQYPILLQHTVTLSKMDLGEVVFLACHEAPAPLGFTFRAGVRVPAVFSATGKAMLSTLPMHNIKSLYEGI
FPEPMTPNGVSNFETLADEIAAIQQSRISLDDGQLRDGMYCLGTYIRNASGNAVAGMAVSFLQAEYESKRAEVSAVLIEL
AKQIEQRLGFID

Sequences:

>Translated_252_residues
MSTSAVPALDKTFQILDLITASQQPLTAAYIAKELKLPRSSTHNILQSLLTKHVIYKDSEGRFHLGSYLLYWAGKYEQQQ
GVVQLFKDLIMQYPILLQHTVTLSKMDLGEVVFLACHEAPAPLGFTFRAGVRVPAVFSATGKAMLSTLPMHNIKSLYEGI
FPEPMTPNGVSNFETLADEIAAIQQSRISLDDGQLRDGMYCLGTYIRNASGNAVAGMAVSFLQAEYESKRAEVSAVLIEL
AKQIEQRLGFID
>Mature_251_residues
STSAVPALDKTFQILDLITASQQPLTAAYIAKELKLPRSSTHNILQSLLTKHVIYKDSEGRFHLGSYLLYWAGKYEQQQG
VVQLFKDLIMQYPILLQHTVTLSKMDLGEVVFLACHEAPAPLGFTFRAGVRVPAVFSATGKAMLSTLPMHNIKSLYEGIF
PEPMTPNGVSNFETLADEIAAIQQSRISLDDGQLRDGMYCLGTYIRNASGNAVAGMAVSFLQAEYESKRAEVSAVLIELA
KQIEQRLGFID

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788581, Length=252, Percent_Identity=25.3968253968254, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1786468, Length=219, Percent_Identity=23.7442922374429, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27804; Mature: 27673

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSAVPALDKTFQILDLITASQQPLTAAYIAKELKLPRSSTHNILQSLLTKHVIYKDSE
CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEECCC
GRFHLGSYLLYWAGKYEQQQGVVQLFKDLIMQYPILLQHTVTLSKMDLGEVVFLACHEAP
CCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHEEEEEECCCC
APLGFTFRAGVRVPAVFSATGKAMLSTLPMHNIKSLYEGIFPEPMTPNGVSNFETLADEI
CCCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
AAIQQSRISLDDGQLRDGMYCLGTYIRNASGNAVAGMAVSFLQAEYESKRAEVSAVLIEL
HHHHHHHCCCCCCCHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKQIEQRLGFID
HHHHHHHCCCCC
>Mature Secondary Structure 
STSAVPALDKTFQILDLITASQQPLTAAYIAKELKLPRSSTHNILQSLLTKHVIYKDSE
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEECCC
GRFHLGSYLLYWAGKYEQQQGVVQLFKDLIMQYPILLQHTVTLSKMDLGEVVFLACHEAP
CCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHEEEEEECCCC
APLGFTFRAGVRVPAVFSATGKAMLSTLPMHNIKSLYEGIFPEPMTPNGVSNFETLADEI
CCCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
AAIQQSRISLDDGQLRDGMYCLGTYIRNASGNAVAGMAVSFLQAEYESKRAEVSAVLIEL
HHHHHHHCCCCCCCHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKQIEQRLGFID
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]