Click here to switch to the map view.

The map label for this gene is rnd [H]

Identifier: 93005631

GI number: 93005631

Start: 943595

End: 944737

Strand: Direct

Name: rnd [H]

Synonym: Pcryo_0801

Alternate gene names: 93005631

Gene position: 943595-944737 (Clockwise)

Preceding gene: 93005630

Following gene: 93005637

Centisome position: 30.84

GC content: 43.31

Gene sequence:

>1143_bases
GTGCGTAAGCAAAGCCAGTTGGATGAAGTGATTGAGGCATTGACCACTTGCGGGCGTGTGGCATTAGATACCGAGTTTAT
CAAGCGCGATACCTATTATCCACGCTTAGCACTGATACAGCTAAATACTGGCAATCATGTATATTTATTAGATGCGCCGC
AGTTACAACTGAGTGAGCTATGGCAAGCACTTATGAAAGTTGATGTGGCTATCTGGCATGCTTGTGGTGAAGATTTAGGT
ATATTTTATCTATTGTCCGGCTGCCCGCCACTGACCAATATTTTTGATACGCAAATTGCCTTGTCCTACTTAACAGGTCA
ATTACAGATGGGTTATCAGCAGGCGCTTGATGAACAGCTCGATATGCATATTGATAAGGAACAAAGCCAGTCAGATTGGT
TACAGCGACCATTATCAGATGAGCAAGAGCAATATGCGATTGATGATGTGCGCTTTTTACCTGCGTTATATTTGAGTCTT
GAATACGCCCTAAAATCTCAAGGTCTCTATGAGTATGTCTGGGAAGACTGTCAGCTTTACGCCAACGACTTATATGATGC
TCAAAATGTTGCAGACGAGCAGATGTATCTAACCATGGCAGATTATCGCTATACCTCTGAGCAAATGGCAATATTGCAGG
CGGTAGCCACATGGCGTGAAGAGCTAGCGCGCTCAACCAATCAGCCCCGTACTTTTGTCATAAAAAAACAAGCCGTGCGT
GAGATTATCACTGAAAAACCAAACACGATGCGTGAGCTTGCGCATAAGACAACGATACATCGCAGTATGTTGCGACTGTA
TGGTGAAGAATTACTCAAAGTGATAAAGGAAGCAAAAAATCTGCATCCTGCAGAATATCCAGATTCTCTATTGCCGCCGT
ATCGCTCAAAGAATAAAGTACTCTCAAAAGCGGTACAAAAAACGATAGATGATCAAGCAAAAGCTACCGGCGTACCCGCT
AATGTCTTGATGCGTAAAAAATGGCTTGGGCAATTATATGAAGTGATTGCTTTTGATAAAGATATTAGCGAGTTGCCGCA
AGGGTTGAAAGGCTGGCGTCATGATTGGGTAATGCACACCTTTATTCCCGTTATCGAAGCGCATAAAACCGAGCTACAGC
AAGGCATGGGTATCAATGTATAG

Upstream 100 bases:

>100_bases
AGTACACCATTCAGTCAATCCAGCCAAATTAGTAGACCTGCCAGTAGAGCCGGATATTGACGCATTATTAGATATTGCTG
ATGAGGTTGCCGTCACTTGG

Downstream 100 bases:

>100_bases
GGTTTAACGCCTGACACTTATCTGCGTTCAAATTGACCATACTGTAAAAAATATCCTGTCTGCTTGGCAACGTTAGTATC
AATCAACATGCCGGTATGCG

Product: 3'-5' exonuclease

Products: NA

Alternate protein names: RNase D [H]

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MRKQSQLDEVIEALTTCGRVALDTEFIKRDTYYPRLALIQLNTGNHVYLLDAPQLQLSELWQALMKVDVAIWHACGEDLG
IFYLLSGCPPLTNIFDTQIALSYLTGQLQMGYQQALDEQLDMHIDKEQSQSDWLQRPLSDEQEQYAIDDVRFLPALYLSL
EYALKSQGLYEYVWEDCQLYANDLYDAQNVADEQMYLTMADYRYTSEQMAILQAVATWREELARSTNQPRTFVIKKQAVR
EIITEKPNTMRELAHKTTIHRSMLRLYGEELLKVIKEAKNLHPAEYPDSLLPPYRSKNKVLSKAVQKTIDDQAKATGVPA
NVLMRKKWLGQLYEVIAFDKDISELPQGLKGWRHDWVMHTFIPVIEAHKTELQQGMGINV

Sequences:

>Translated_380_residues
MRKQSQLDEVIEALTTCGRVALDTEFIKRDTYYPRLALIQLNTGNHVYLLDAPQLQLSELWQALMKVDVAIWHACGEDLG
IFYLLSGCPPLTNIFDTQIALSYLTGQLQMGYQQALDEQLDMHIDKEQSQSDWLQRPLSDEQEQYAIDDVRFLPALYLSL
EYALKSQGLYEYVWEDCQLYANDLYDAQNVADEQMYLTMADYRYTSEQMAILQAVATWREELARSTNQPRTFVIKKQAVR
EIITEKPNTMRELAHKTTIHRSMLRLYGEELLKVIKEAKNLHPAEYPDSLLPPYRSKNKVLSKAVQKTIDDQAKATGVPA
NVLMRKKWLGQLYEVIAFDKDISELPQGLKGWRHDWVMHTFIPVIEAHKTELQQGMGINV
>Mature_380_residues
MRKQSQLDEVIEALTTCGRVALDTEFIKRDTYYPRLALIQLNTGNHVYLLDAPQLQLSELWQALMKVDVAIWHACGEDLG
IFYLLSGCPPLTNIFDTQIALSYLTGQLQMGYQQALDEQLDMHIDKEQSQSDWLQRPLSDEQEQYAIDDVRFLPALYLSL
EYALKSQGLYEYVWEDCQLYANDLYDAQNVADEQMYLTMADYRYTSEQMAILQAVATWREELARSTNQPRTFVIKKQAVR
EIITEKPNTMRELAHKTTIHRSMLRLYGEELLKVIKEAKNLHPAEYPDSLLPPYRSKNKVLSKAVQKTIDDQAKATGVPA
NVLMRKKWLGQLYEVIAFDKDISELPQGLKGWRHDWVMHTFIPVIEAHKTELQQGMGINV

Specific function: Cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3' maturation of several stable RNAs [H]

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HRDC domain [H]

Homologues:

Organism=Escherichia coli, GI1788105, Length=360, Percent_Identity=28.6111111111111, Blast_Score=135, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002562
- InterPro:   IPR002121
- InterPro:   IPR010997
- InterPro:   IPR006292
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01612 3_5_exonuc; PF00570 HRDC [H]

EC number: =3.1.13.5 [H]

Molecular weight: Translated: 43954; Mature: 43954

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS50967 HRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKQSQLDEVIEALTTCGRVALDTEFIKRDTYYPRLALIQLNTGNHVYLLDAPQLQLSEL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCHHHHHH
WQALMKVDVAIWHACGEDLGIFYLLSGCPPLTNIFDTQIALSYLTGQLQMGYQQALDEQL
HHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DMHIDKEQSQSDWLQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQGLYEYVWEDCQLY
HHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ANDLYDAQNVADEQMYLTMADYRYTSEQMAILQAVATWREELARSTNQPRTFVIKKQAVR
HHHHHHHHHCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHH
EIITEKPNTMRELAHKTTIHRSMLRLYGEELLKVIKEAKNLHPAEYPDSLLPPYRSKNKV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LSKAVQKTIDDQAKATGVPANVLMRKKWLGQLYEVIAFDKDISELPQGLKGWRHDWVMHT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FIPVIEAHKTELQQGMGINV
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRKQSQLDEVIEALTTCGRVALDTEFIKRDTYYPRLALIQLNTGNHVYLLDAPQLQLSEL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCHHHHHH
WQALMKVDVAIWHACGEDLGIFYLLSGCPPLTNIFDTQIALSYLTGQLQMGYQQALDEQL
HHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DMHIDKEQSQSDWLQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQGLYEYVWEDCQLY
HHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ANDLYDAQNVADEQMYLTMADYRYTSEQMAILQAVATWREELARSTNQPRTFVIKKQAVR
HHHHHHHHHCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHH
EIITEKPNTMRELAHKTTIHRSMLRLYGEELLKVIKEAKNLHPAEYPDSLLPPYRSKNKV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LSKAVQKTIDDQAKATGVPANVLMRKKWLGQLYEVIAFDKDISELPQGLKGWRHDWVMHT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FIPVIEAHKTELQQGMGINV
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3041371; 9097040; 9278503; 8107670 [H]