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The map label for this gene is ymdC [H]

Identifier: 93005627

GI number: 93005627

Start: 938779

End: 940479

Strand: Reverse

Name: ymdC [H]

Synonym: Pcryo_0797

Alternate gene names: 93005627

Gene position: 940479-938779 (Counterclockwise)

Preceding gene: 93005632

Following gene: 93005626

Centisome position: 30.74

GC content: 43.74

Gene sequence:

>1701_bases
ATGTCGATGTTCAGTATAGAACCCAGCAACTTATCGTTGAGCCTGACACTCGGTCTCACCTTAGGTCTTAGTGGATGCCA
AAGCTTACCCAAGCAGCCGCACTTGCCTGAAAGCCAAGCACTATCCGCACGGGTCAATGCTTTATACCAATCGGACATCA
GCAAACAAGCTGAAATCGAAAAAGATGCCCAAAAAGAGGGCGATCCTATAAATACTACGACTGTCAGCACAGACCTTGCT
ACCCCAAACACGGATAGTCTTGATTTGGTTGCTGCCATCAGTCAACAGAGTGAGATTCACCCTGATTTATCAGGCTATCA
TCCAATTGTGACGGGCGCCAATGCTTTTGCCTCACGCAGTATATTGACAGGTATGGCAACGCGCAATATCGATGCCCAGT
ACTATATCTGGCACGATGATCAAGCCGGTCAGCTGATGCTCAAAGACTTATGGGATGCGGCGGAGCGCGGCGTGATCGTA
CGCTTACTGCTCGATGATTTTAATAATAATGCTAAATTTGATCAGCATTTACTGCGTTTTGCCAGTCACCCTAATATTGC
TGTGCGTATTATCAATCCACTGATGCATCGTAAATTTCAGACTTTAAATTTTGTCACCGGTTTGCCACGTATCAATAGAC
GCATGCACAATAAAAGCATGATTTTTGATAAACAAATCACCATCATTGGTGGTCGTAATATCGGTGATGAATACCTAAGC
AATGACAAAAGCAGTCAGTTCGCAGATTTGGATGTACTATTGATTGGTAAAGTGGTGGCAGATATTGACAATAGCTTTGC
CAGCTACTGGTCAGCACCAATATCATTCGATATTCAAACCTTAGCGACCCTTGATAAAGGAGAGACGACTGACTTCGTAC
AAGGGCTCGATAAGTTAAAAGCCGATGAGAAAAGTAGTAGCAGTGGCAGCTTATCAGTGTATAAAGCAGCCATTGAAGAC
TCCTCTATCGATACGGATTTGATTAATAAACGCGTGCCGTTTCGCTGGACGGACATGCAATTCTTAAGTGATGACGTCGG
CAAATTGACTAAAACCGTGCCAGCAGACACCAATCTGGTGCATCAGCTGCGCACTTTGCTTGGTAGTCCATCAAAGAAAC
TGACTATTATCTCCTCCTACTTTGTACCGACCAAAGACGGTGTTAATACGTTGGTCTCATTAGCAGAATCTGGTATCGAA
ATCAAAATTCTCACCAATTCATTTGATGCAACCGACGTAACGGCGGTACATTCTGGCTATAGCCAATGGCGTCCTAGTTT
ACTGCGCGCGGGAGTCAAGATTTATGAGCTAAAATCAACCGCTTCTGAAGAAAAGCGTGAAAACAAACTTTGGAAAGCGC
GTAGCCAATCTTCAACCAGTTTACATGCAAAAGCTTTCGCCGTTGATGACTATCAAGTATTCATTGGCTCATATAATGTT
GACCCGCGCTCGGCTAATATCAATACTGAGATGGGCGTGATTATCAATGATGATGAGCTTGCGACTCAGTTGCATGGTGC
ATTGAGCGATGACTTACTAAACCAAGCGTATGAAGTGAAGTTACTAGAAAACGGTGATTTACAATGGCATACCATGGAAA
AAGATAAGAAAGTCATTTATGATTCAGAGCCGCGCGTCGATGTCAGTGACCATGTTTGGCTAACCATCATGTCATGGTTA
CCTATTGATTGGCTATTATAG

Upstream 100 bases:

>100_bases
CCTTATAATCAGTGTTATTATCTGCAAAACCACCAAGAAATCCATACATATTTTTTGGCAACTTCTCCATTATATAAAGG
CTCACTAAGGTAATTTATTT

Downstream 100 bases:

>100_bases
TTGGCTCAATATAAAAGAAACAGAAGTTGAATGCTCTTGGCTTAATTCTGTTTCATATAATCATATTTGACATAAACGTC
TTTATTTTGACGATAAATCA

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 565

Protein sequence:

>566_residues
MSMFSIEPSNLSLSLTLGLTLGLSGCQSLPKQPHLPESQALSARVNALYQSDISKQAEIEKDAQKEGDPINTTTVSTDLA
TPNTDSLDLVAAISQQSEIHPDLSGYHPIVTGANAFASRSILTGMATRNIDAQYYIWHDDQAGQLMLKDLWDAAERGVIV
RLLLDDFNNNAKFDQHLLRFASHPNIAVRIINPLMHRKFQTLNFVTGLPRINRRMHNKSMIFDKQITIIGGRNIGDEYLS
NDKSSQFADLDVLLIGKVVADIDNSFASYWSAPISFDIQTLATLDKGETTDFVQGLDKLKADEKSSSSGSLSVYKAAIED
SSIDTDLINKRVPFRWTDMQFLSDDVGKLTKTVPADTNLVHQLRTLLGSPSKKLTIISSYFVPTKDGVNTLVSLAESGIE
IKILTNSFDATDVTAVHSGYSQWRPSLLRAGVKIYELKSTASEEKRENKLWKARSQSSTSLHAKAFAVDDYQVFIGSYNV
DPRSANINTEMGVIINDDELATQLHGALSDDLLNQAYEVKLLENGDLQWHTMEKDKKVIYDSEPRVDVSDHVWLTIMSWL
PIDWLL

Sequences:

>Translated_566_residues
MSMFSIEPSNLSLSLTLGLTLGLSGCQSLPKQPHLPESQALSARVNALYQSDISKQAEIEKDAQKEGDPINTTTVSTDLA
TPNTDSLDLVAAISQQSEIHPDLSGYHPIVTGANAFASRSILTGMATRNIDAQYYIWHDDQAGQLMLKDLWDAAERGVIV
RLLLDDFNNNAKFDQHLLRFASHPNIAVRIINPLMHRKFQTLNFVTGLPRINRRMHNKSMIFDKQITIIGGRNIGDEYLS
NDKSSQFADLDVLLIGKVVADIDNSFASYWSAPISFDIQTLATLDKGETTDFVQGLDKLKADEKSSSSGSLSVYKAAIED
SSIDTDLINKRVPFRWTDMQFLSDDVGKLTKTVPADTNLVHQLRTLLGSPSKKLTIISSYFVPTKDGVNTLVSLAESGIE
IKILTNSFDATDVTAVHSGYSQWRPSLLRAGVKIYELKSTASEEKRENKLWKARSQSSTSLHAKAFAVDDYQVFIGSYNV
DPRSANINTEMGVIINDDELATQLHGALSDDLLNQAYEVKLLENGDLQWHTMEKDKKVIYDSEPRVDVSDHVWLTIMSWL
PIDWLL
>Mature_565_residues
SMFSIEPSNLSLSLTLGLTLGLSGCQSLPKQPHLPESQALSARVNALYQSDISKQAEIEKDAQKEGDPINTTTVSTDLAT
PNTDSLDLVAAISQQSEIHPDLSGYHPIVTGANAFASRSILTGMATRNIDAQYYIWHDDQAGQLMLKDLWDAAERGVIVR
LLLDDFNNNAKFDQHLLRFASHPNIAVRIINPLMHRKFQTLNFVTGLPRINRRMHNKSMIFDKQITIIGGRNIGDEYLSN
DKSSQFADLDVLLIGKVVADIDNSFASYWSAPISFDIQTLATLDKGETTDFVQGLDKLKADEKSSSSGSLSVYKAAIEDS
SIDTDLINKRVPFRWTDMQFLSDDVGKLTKTVPADTNLVHQLRTLLGSPSKKLTIISSYFVPTKDGVNTLVSLAESGIEI
KILTNSFDATDVTAVHSGYSQWRPSLLRAGVKIYELKSTASEEKRENKLWKARSQSSTSLHAKAFAVDDYQVFIGSYNVD
PRSANINTEMGVIINDDELATQLHGALSDDLLNQAYEVKLLENGDLQWHTMEKDKKVIYDSEPRVDVSDHVWLTIMSWLP
IDWLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=478, Percent_Identity=38.7029288702929, Blast_Score=329, Evalue=3e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62941; Mature: 62809

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMFSIEPSNLSLSLTLGLTLGLSGCQSLPKQPHLPESQALSARVNALYQSDISKQAEIE
CCEEEECCCCEEEEEEEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHH
KDAQKEGDPINTTTVSTDLATPNTDSLDLVAAISQQSEIHPDLSGYHPIVTGANAFASRS
HHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHH
ILTGMATRNIDAQYYIWHDDQAGQLMLKDLWDAAERGVIVRLLLDDFNNNAKFDQHLLRF
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHH
ASHPNIAVRIINPLMHRKFQTLNFVTGLPRINRRMHNKSMIFDKQITIIGGRNIGDEYLS
HCCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECEEEEEECCCCCHHHHC
NDKSSQFADLDVLLIGKVVADIDNSFASYWSAPISFDIQTLATLDKGETTDFVQGLDKLK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHCCCCCCCHHHHHHHHHHC
ADEKSSSSGSLSVYKAAIEDSSIDTDLINKRVPFRWTDMQFLSDDVGKLTKTVPADTNLV
CCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCEECCHHHHHHHHHHHHHCCCCCHHHH
HQLRTLLGSPSKKLTIISSYFVPTKDGVNTLVSLAESGIEIKILTNSFDATDVTAVHSGY
HHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCH
SQWRPSLLRAGVKIYELKSTASEEKRENKLWKARSQSSTSLHAKAFAVDDYQVFIGSYNV
HHHCHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEECC
DPRSANINTEMGVIINDDELATQLHGALSDDLLNQAYEVKLLENGDLQWHTMEKDKKVIY
CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEEEEEECCCEEEEEECCCCEEEE
DSEPRVDVSDHVWLTIMSWLPIDWLL
CCCCCCCCCCCHHHHHHHHCCHHHCC
>Mature Secondary Structure 
SMFSIEPSNLSLSLTLGLTLGLSGCQSLPKQPHLPESQALSARVNALYQSDISKQAEIE
CEEEECCCCEEEEEEEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHH
KDAQKEGDPINTTTVSTDLATPNTDSLDLVAAISQQSEIHPDLSGYHPIVTGANAFASRS
HHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHH
ILTGMATRNIDAQYYIWHDDQAGQLMLKDLWDAAERGVIVRLLLDDFNNNAKFDQHLLRF
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHH
ASHPNIAVRIINPLMHRKFQTLNFVTGLPRINRRMHNKSMIFDKQITIIGGRNIGDEYLS
HCCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECEEEEEECCCCCHHHHC
NDKSSQFADLDVLLIGKVVADIDNSFASYWSAPISFDIQTLATLDKGETTDFVQGLDKLK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHCCCCCCCHHHHHHHHHHC
ADEKSSSSGSLSVYKAAIEDSSIDTDLINKRVPFRWTDMQFLSDDVGKLTKTVPADTNLV
CCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCEECCHHHHHHHHHHHHHCCCCCHHHH
HQLRTLLGSPSKKLTIISSYFVPTKDGVNTLVSLAESGIEIKILTNSFDATDVTAVHSGY
HHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCH
SQWRPSLLRAGVKIYELKSTASEEKRENKLWKARSQSSTSLHAKAFAVDDYQVFIGSYNV
HHHCHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEECC
DPRSANINTEMGVIINDDELATQLHGALSDDLLNQAYEVKLLENGDLQWHTMEKDKKVIY
CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEEEEEECCCEEEEEECCCCEEEE
DSEPRVDVSDHVWLTIMSWLPIDWLL
CCCCCCCCCCCHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]