| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
Click here to switch to the map view.
The map label for this gene is yhjE [H]
Identifier: 93005626
GI number: 93005626
Start: 937283
End: 938584
Strand: Reverse
Name: yhjE [H]
Synonym: Pcryo_0796
Alternate gene names: 93005626
Gene position: 938584-937283 (Counterclockwise)
Preceding gene: 93005627
Following gene: 93005625
Centisome position: 30.67
GC content: 40.4
Gene sequence:
>1302_bases ATGCCTTCTCGTTCTCAATATGCACTTATGTCTTCTAAAGATAAAAATACGGTACTGTTTACTTGCTATAGCAGTGCAAT AGCGTTTTTCGACTTTTTAATATACCTATATCTTGCAGATATGTTGGCAGCGACTTTATTTCCTGTTAGCTCAGATCCCA ATCTTATGAAGATACAGGGGCTGTCATTATTTGCAATTGGTTATGTGGCACGCCCACTTGGTGGTGTTATCTTTGGACGT TATGGCGATATAAAAGGTCGTAAACCGTTATTACTAATCAGTATCTTGATTACGGCAGCAAGCTTATTGGCGATGGGATG TTTGCCTACTTATGCACAATGGGGTTTGGCAGCGCCTGCATTGTTTATCGTCTTACGAATCATACATGGCATGGCCTATG GTCTTTATGTTCCACTCTCTTGGGTGTTCGTTGCAGAGCACGTGCCGCGCCAATATCTGTCAGTAGGCTGTAGCTATGTG ACTGCCAGTTTTTTTGTGGGTGTTTTATTCTCTAATGGTTTTTTTCTTTGGTTAAGCAGTACGTTGACCACTGAGCAATT GGCAGATTATGGCTGGCGTTTGCCTTTCTTTATAGCGGCTATCCTGACGGTTTTACCGCTCCTTGCCTGGCGATGGATAG AAGAAACCCCGTTTTTCACTCAGATGAAAAAATCAAGACCTAGTGATTATGTTGCTAAGCCTTTTACGACCCTATTTAAG CATTGCAAGCATGCTATCTTTATAGGTCTGGTTCTCACTTTAATTGTCTCAAGCATCACCACAGTAGTGGTTATTTTATT GCCTGATTTGATTGAATTACGCTTTACGCTCGATACTGACTTGTTTGGATTCTCGCACAGTCTTGGCATCGTTTTTATGA TTTTTGGCTGTATTTTTTATGGCATCATCTCTAACCATCAAAACTTTGGCAAAATTTTGGCGATAGGCTCTATTATTTTA ATCGCTCAAATGCTTGCTTTCTTCTATCATTTAGAGGCAAGTGGCGACTATATCCTTATTATGTATGCACTTTTGGGCTT TTGTGCCGGTGTTATCGGCATGATACCTGCCATCTTGATTCAACTATTTCCTACCAATGTGCGACTCACCGGAATGGCTT TTTGCTACAATGTCACTTATGGTATCGTTGGGGTGCTAGTACCATTTGGACTTGGCTATGCTACTTTATATGTGAGCTTT TCACCCGCACTCTATATCACTTTCATCGGTTTTATTGCCATCATCATGGGCATTTATTTTTATAATCTGCCTGAATTCAA AAAAATCGATCAGGTCATATAA
Upstream 100 bases:
>100_bases AAATCATTAGCAATGATGATTTATCGTTTTTTATTATAGGCAGTTATTTAGATAATGACTGCCTTAACGAATACCTTAAT GTCTGGATGCGTGACCTAAT
Downstream 100 bases:
>100_bases TGTTATTTTATCCAAATAGGCTGATCTCTTATTAGCCTATTCATTGTAGTTTTACAAGCCATTGCAAGTGATACGTAAAC TGACACATATACCATCAGCA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MPSRSQYALMSSKDKNTVLFTCYSSAIAFFDFLIYLYLADMLAATLFPVSSDPNLMKIQGLSLFAIGYVARPLGGVIFGR YGDIKGRKPLLLISILITAASLLAMGCLPTYAQWGLAAPALFIVLRIIHGMAYGLYVPLSWVFVAEHVPRQYLSVGCSYV TASFFVGVLFSNGFFLWLSSTLTTEQLADYGWRLPFFIAAILTVLPLLAWRWIEETPFFTQMKKSRPSDYVAKPFTTLFK HCKHAIFIGLVLTLIVSSITTVVVILLPDLIELRFTLDTDLFGFSHSLGIVFMIFGCIFYGIISNHQNFGKILAIGSIIL IAQMLAFFYHLEASGDYILIMYALLGFCAGVIGMIPAILIQLFPTNVRLTGMAFCYNVTYGIVGVLVPFGLGYATLYVSF SPALYITFIGFIAIIMGIYFYNLPEFKKIDQVI
Sequences:
>Translated_433_residues MPSRSQYALMSSKDKNTVLFTCYSSAIAFFDFLIYLYLADMLAATLFPVSSDPNLMKIQGLSLFAIGYVARPLGGVIFGR YGDIKGRKPLLLISILITAASLLAMGCLPTYAQWGLAAPALFIVLRIIHGMAYGLYVPLSWVFVAEHVPRQYLSVGCSYV TASFFVGVLFSNGFFLWLSSTLTTEQLADYGWRLPFFIAAILTVLPLLAWRWIEETPFFTQMKKSRPSDYVAKPFTTLFK HCKHAIFIGLVLTLIVSSITTVVVILLPDLIELRFTLDTDLFGFSHSLGIVFMIFGCIFYGIISNHQNFGKILAIGSIIL IAQMLAFFYHLEASGDYILIMYALLGFCAGVIGMIPAILIQLFPTNVRLTGMAFCYNVTYGIVGVLVPFGLGYATLYVSF SPALYITFIGFIAIIMGIYFYNLPEFKKIDQVI >Mature_432_residues PSRSQYALMSSKDKNTVLFTCYSSAIAFFDFLIYLYLADMLAATLFPVSSDPNLMKIQGLSLFAIGYVARPLGGVIFGRY GDIKGRKPLLLISILITAASLLAMGCLPTYAQWGLAAPALFIVLRIIHGMAYGLYVPLSWVFVAEHVPRQYLSVGCSYVT ASFFVGVLFSNGFFLWLSSTLTTEQLADYGWRLPFFIAAILTVLPLLAWRWIEETPFFTQMKKSRPSDYVAKPFTTLFKH CKHAIFIGLVLTLIVSSITTVVVILLPDLIELRFTLDTDLFGFSHSLGIVFMIFGCIFYGIISNHQNFGKILAIGSIILI AQMLAFFYHLEASGDYILIMYALLGFCAGVIGMIPAILIQLFPTNVRLTGMAFCYNVTYGIVGVLVPFGLGYATLYVSFS PALYITFIGFIAIIMGIYFYNLPEFKKIDQVI
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789941, Length=422, Percent_Identity=29.1469194312796, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI1790550, Length=430, Percent_Identity=25.1162790697674, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1788292, Length=389, Percent_Identity=23.9074550128535, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1788942, Length=191, Percent_Identity=30.3664921465969, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI87082404, Length=405, Percent_Identity=22.2222222222222, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 48177; Mature: 48046
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSRSQYALMSSKDKNTVLFTCYSSAIAFFDFLIYLYLADMLAATLFPVSSDPNLMKIQG CCCCCCCHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC LSLFAIGYVARPLGGVIFGRYGDIKGRKPLLLISILITAASLLAMGCLPTYAQWGLAAPA CHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH LFIVLRIIHGMAYGLYVPLSWVFVAEHVPRQYLSVGCSYVTASFFVGVLFSNGFFLWLSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC TLTTEQLADYGWRLPFFIAAILTVLPLLAWRWIEETPFFTQMKKSRPSDYVAKPFTTLFK HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH HCKHAIFIGLVLTLIVSSITTVVVILLPDLIELRFTLDTDLFGFSHSLGIVFMIFGCIFY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHCHHHHHHHHHHHHHHHHH GIISNHQNFGKILAIGSIILIAQMLAFFYHLEASGDYILIMYALLGFCAGVIGMIPAILI HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QLFPTNVRLTGMAFCYNVTYGIVGVLVPFGLGYATLYVSFSPALYITFIGFIAIIMGIYF HHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCHHHHHHHHHHHHHHHHHHH YNLPEFKKIDQVI HCCCCHHHHHHCC >Mature Secondary Structure PSRSQYALMSSKDKNTVLFTCYSSAIAFFDFLIYLYLADMLAATLFPVSSDPNLMKIQG CCCCCCHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC LSLFAIGYVARPLGGVIFGRYGDIKGRKPLLLISILITAASLLAMGCLPTYAQWGLAAPA CHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH LFIVLRIIHGMAYGLYVPLSWVFVAEHVPRQYLSVGCSYVTASFFVGVLFSNGFFLWLSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC TLTTEQLADYGWRLPFFIAAILTVLPLLAWRWIEETPFFTQMKKSRPSDYVAKPFTTLFK HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH HCKHAIFIGLVLTLIVSSITTVVVILLPDLIELRFTLDTDLFGFSHSLGIVFMIFGCIFY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHCHHHHHHHHHHHHHHHHH GIISNHQNFGKILAIGSIILIAQMLAFFYHLEASGDYILIMYALLGFCAGVIGMIPAILI HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QLFPTNVRLTGMAFCYNVTYGIVGVLVPFGLGYATLYVSFSPALYITFIGFIAIIMGIYF HHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCHHHHHHHHHHHHHHHHHHH YNLPEFKKIDQVI HCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]