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The map label for this gene is dppB [H]

Identifier: 93005588

GI number: 93005588

Start: 891349

End: 892365

Strand: Reverse

Name: dppB [H]

Synonym: Pcryo_0758

Alternate gene names: 93005588

Gene position: 892365-891349 (Counterclockwise)

Preceding gene: 93005589

Following gene: 93005587

Centisome position: 29.16

GC content: 44.94

Gene sequence:

>1017_bases
ATGCTACTTTATATTCTACGCCGGATTTTAATCTTAGTTCCTGTCTATATCGGCTTAACCCTATCGACTTTTATTCTTAT
TCGCCTCGTACCTGGCGATGCGGTTGAGATTATGATGGGAGAGCGCATGGTTGATCCTGAGCTACATGCGCAGGCTTTAG
CCCGCCTTGGTCTAGATAAACCGTTACCCGTACAATACTGGGATTATCTCACTGGGATACTGCAAGGTAACTTTGGTGAA
TCCTTTCGTACCCGCACACCGATATTGCAGGACTTTTTTGCGCATTTTGTGCCGACATTAGAGCTTGCACTTTGCGCGAT
TACGATAGCGAGTATCGTTGGTATTAGTCTGGGTATCCTAGCTGCCTTACGCCGTGGTACTTGGCTGGACTATACATTAA
TGTCTGGCGCACTTGCCGGCTACTCTATGCCGATCTATTTACTTGGTCCTATCCTAACGGGTATTTTCGCCCACTATCTA
GGTCTACTACCGGTCTCTGGCGTTATCTCTGTCGCGCAGTTCCTAGACGTCAAACCTTTATACGGGTCTTGGCTACTAGG
TTCTTTAAGCTCTGGTGAGCCCGGCGCCTTTTGGAACGTTGTAAAACATTTCATCTTGCCCTCGGTTGCCCTATCTACTA
TTCCTCTAGCTATGATTGCTCGTATGACACGTTCGGCGATGCTTGAAGTGTTAGATGAAGATTATGTGCGTACTGCAAGA
GCCAAAGGTCTATCACCAAAACGTGTGATTTTAATTCACGTGATGCGTAATGCGCTCATTACCGTGGTTACTGTAGTGGG
ATTACAGATGGCAACATTGCTGGCTGGTGCCATTATCACTGAGACTATTTTTAGTTGGCCCGGTGTCGGCAACTGGTTAT
TAGATGGTTTCTTTACACGTGATTATCCCATTGTACAAAATGGTATTTTATTGGTCGCTACTGCTCTGATTCTGGTGAGC
TTAATGATCGATATTTTATATGGATTTATTAATCCTAGAATTCGCCATTCTTCATAG

Upstream 100 bases:

>100_bases
ATATACGTTTGCGGCTGGTTCAGAGATTCTGTTCCAGCCCTCTTTGTCTGAGCCTGAGCTATATCTGGTAAAAGCCACTT
TTATAAAATCGAGCCGAGCT

Downstream 100 bases:

>100_bases
TCTATTGTTAGGGTGAAGCCCATTTGATGCATTATTAATGTATCGACAATTGCTATTTATAGTTTTTAATAATTACCCAT
AGTGCTCATAAAGATCTTGT

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MLLYILRRILILVPVYIGLTLSTFILIRLVPGDAVEIMMGERMVDPELHAQALARLGLDKPLPVQYWDYLTGILQGNFGE
SFRTRTPILQDFFAHFVPTLELALCAITIASIVGISLGILAALRRGTWLDYTLMSGALAGYSMPIYLLGPILTGIFAHYL
GLLPVSGVISVAQFLDVKPLYGSWLLGSLSSGEPGAFWNVVKHFILPSVALSTIPLAMIARMTRSAMLEVLDEDYVRTAR
AKGLSPKRVILIHVMRNALITVVTVVGLQMATLLAGAIITETIFSWPGVGNWLLDGFFTRDYPIVQNGILLVATALILVS
LMIDILYGFINPRIRHSS

Sequences:

>Translated_338_residues
MLLYILRRILILVPVYIGLTLSTFILIRLVPGDAVEIMMGERMVDPELHAQALARLGLDKPLPVQYWDYLTGILQGNFGE
SFRTRTPILQDFFAHFVPTLELALCAITIASIVGISLGILAALRRGTWLDYTLMSGALAGYSMPIYLLGPILTGIFAHYL
GLLPVSGVISVAQFLDVKPLYGSWLLGSLSSGEPGAFWNVVKHFILPSVALSTIPLAMIARMTRSAMLEVLDEDYVRTAR
AKGLSPKRVILIHVMRNALITVVTVVGLQMATLLAGAIITETIFSWPGVGNWLLDGFFTRDYPIVQNGILLVATALILVS
LMIDILYGFINPRIRHSS
>Mature_338_residues
MLLYILRRILILVPVYIGLTLSTFILIRLVPGDAVEIMMGERMVDPELHAQALARLGLDKPLPVQYWDYLTGILQGNFGE
SFRTRTPILQDFFAHFVPTLELALCAITIASIVGISLGILAALRRGTWLDYTLMSGALAGYSMPIYLLGPILTGIFAHYL
GLLPVSGVISVAQFLDVKPLYGSWLLGSLSSGEPGAFWNVVKHFILPSVALSTIPLAMIARMTRSAMLEVLDEDYVRTAR
AKGLSPKRVILIHVMRNALITVVTVVGLQMATLLAGAIITETIFSWPGVGNWLLDGFFTRDYPIVQNGILLVATALILVS
LMIDILYGFINPRIRHSS

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=54.2772861356932, Blast_Score=366, Evalue=1e-102,
Organism=Escherichia coli, GI1787053, Length=341, Percent_Identity=38.41642228739, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1787497, Length=339, Percent_Identity=35.9882005899705, Blast_Score=201, Evalue=7e-53,
Organism=Escherichia coli, GI1787761, Length=330, Percent_Identity=40.3030303030303, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789888, Length=340, Percent_Identity=33.8235294117647, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1787550, Length=276, Percent_Identity=34.7826086956522, Blast_Score=164, Evalue=8e-42,
Organism=Escherichia coli, GI1788504, Length=371, Percent_Identity=25.3369272237197, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37121; Mature: 37121

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLYILRRILILVPVYIGLTLSTFILIRLVPGDAVEIMMGERMVDPELHAQALARLGLDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCC
PLPVQYWDYLTGILQGNFGESFRTRTPILQDFFAHFVPTLELALCAITIASIVGISLGIL
CCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALRRGTWLDYTLMSGALAGYSMPIYLLGPILTGIFAHYLGLLPVSGVISVAQFLDVKPL
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YGSWLLGSLSSGEPGAFWNVVKHFILPSVALSTIPLAMIARMTRSAMLEVLDEDYVRTAR
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGLSPKRVILIHVMRNALITVVTVVGLQMATLLAGAIITETIFSWPGVGNWLLDGFFTR
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
DYPIVQNGILLVATALILVSLMIDILYGFINPRIRHSS
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLLYILRRILILVPVYIGLTLSTFILIRLVPGDAVEIMMGERMVDPELHAQALARLGLDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCC
PLPVQYWDYLTGILQGNFGESFRTRTPILQDFFAHFVPTLELALCAITIASIVGISLGIL
CCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALRRGTWLDYTLMSGALAGYSMPIYLLGPILTGIFAHYLGLLPVSGVISVAQFLDVKPL
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YGSWLLGSLSSGEPGAFWNVVKHFILPSVALSTIPLAMIARMTRSAMLEVLDEDYVRTAR
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGLSPKRVILIHVMRNALITVVTVVGLQMATLLAGAIITETIFSWPGVGNWLLDGFFTR
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
DYPIVQNGILLVATALILVSLMIDILYGFINPRIRHSS
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]