Click here to switch to the map view.

The map label for this gene is yciO [H]

Identifier: 93005341

GI number: 93005341

Start: 607061

End: 607678

Strand: Reverse

Name: yciO [H]

Synonym: Pcryo_0511

Alternate gene names: 93005341

Gene position: 607678-607061 (Counterclockwise)

Preceding gene: 93005342

Following gene: 93005307

Centisome position: 19.86

GC content: 39.97

Gene sequence:

>618_bases
ATGCAAGTATTTTATATTCATCCAGAAAATCCACAGCCACGGCTGATTGAGCAAGTAGCAGATTTATTACGTAAAGATCA
ATTGATTATTTATCCGACTGATACCAGTTACGCTTTCGGCTGTCGCTTGGGCGCAAAAGATGCCTTGGAAAAACTAAAAC
AAATACGCGCACTTGATGATAAACATCAATTCACTCTACTTTGCCGTGATCTAAGTGAGATTGCGAATTATGCTGCAGTA
GACAATGTCCAATTTAAACAGCTCAAATCGCATACACCAGCACCGATTACCTTTATTTTAAACGCCACCAAAGATGTCCC
TAAGAAGCTGGCACATGCAAAGAAAAAAACCATTGGTATTCGTGTTCCAAGTAATGCTATTGCCCAAGCTTTATTAGAAG
CGATGGATGAACCTATTTTAACCAGCTCATTAATACTACCGAATCGTGATGATATATTAGATGACCCTTTCGAGATCGAA
GAATTATTAGGCAATCAGATAGATGGTCTCATTAATGCTGGCATTAAAACCACCAAACTTACGACCATCGTCGATATGAC
CAGTAGCCAGCCAGAAATCATTCGGCAAGGTGCTGCTGATGTAAGCTCATTGCTGTAG

Upstream 100 bases:

>100_bases
TAATCTTTAGTACAAAAAGTAAAGTTCATCTTAAACAAATTTTTATCATCACCATCTGCCCAATAACCAAATTCTAATAA
TTATAAAATAAGGAATTATT

Downstream 100 bases:

>100_bases
ATATAGACATACTGTAAGTTTTTAAATATGCACTTGCCTAACGATCATACAAAAATTTAAACGAAAAAAAGCTCCAATTG
AATTGGAGCTTTTTTATGTA

Product: Sua5/YciO/YrdC/YwlC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MQVFYIHPENPQPRLIEQVADLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKQIRALDDKHQFTLLCRDLSEIANYAAV
DNVQFKQLKSHTPAPITFILNATKDVPKKLAHAKKKTIGIRVPSNAIAQALLEAMDEPILTSSLILPNRDDILDDPFEIE
ELLGNQIDGLINAGIKTTKLTTIVDMTSSQPEIIRQGAADVSSLL

Sequences:

>Translated_205_residues
MQVFYIHPENPQPRLIEQVADLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKQIRALDDKHQFTLLCRDLSEIANYAAV
DNVQFKQLKSHTPAPITFILNATKDVPKKLAHAKKKTIGIRVPSNAIAQALLEAMDEPILTSSLILPNRDDILDDPFEIE
ELLGNQIDGLINAGIKTTKLTTIVDMTSSQPEIIRQGAADVSSLL
>Mature_205_residues
MQVFYIHPENPQPRLIEQVADLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKQIRALDDKHQFTLLCRDLSEIANYAAV
DNVQFKQLKSHTPAPITFILNATKDVPKKLAHAKKKTIGIRVPSNAIAQALLEAMDEPILTSSLILPNRDDILDDPFEIE
ELLGNQIDGLINAGIKTTKLTTIVDMTSSQPEIIRQGAADVSSLL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=204, Percent_Identity=50.9803921568627, Blast_Score=229, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22785; Mature: 22785

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVFYIHPENPQPRLIEQVADLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKQIRALDD
CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHCCC
KHQFTLLCRDLSEIANYAAVDNVQFKQLKSHTPAPITFILNATKDVPKKLAHAKKKTIGI
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHEEEE
RVPSNAIAQALLEAMDEPILTSSLILPNRDDILDDPFEIEELLGNQIDGLINAGIKTTKL
ECCHHHHHHHHHHHHCCCHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
TTIVDMTSSQPEIIRQGAADVSSLL
EEEEECCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQVFYIHPENPQPRLIEQVADLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKQIRALDD
CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHCCC
KHQFTLLCRDLSEIANYAAVDNVQFKQLKSHTPAPITFILNATKDVPKKLAHAKKKTIGI
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHEEEE
RVPSNAIAQALLEAMDEPILTSSLILPNRDDILDDPFEIEELLGNQIDGLINAGIKTTKL
ECCHHHHHHHHHHHHCCCHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
TTIVDMTSSQPEIIRQGAADVSSLL
EEEEECCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]