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The map label for this gene is desA3 [H]

Identifier: 93004973

GI number: 93004973

Start: 165406

End: 166752

Strand: Reverse

Name: desA3 [H]

Synonym: Pcryo_0142

Alternate gene names: 93004973

Gene position: 166752-165406 (Counterclockwise)

Preceding gene: 93004974

Following gene: 93004972

Centisome position: 5.45

GC content: 43.58

Gene sequence:

>1347_bases
ATGCGCTTGTTACTCCCTATATTTAAAGCTAAATCTGCAGTCTCTACTATAACTTCGTTAGTCGATGCACCATTCAAAAC
CACGCGATATCCGACGTTAACGGGTACGCCGTTACCAAAAGTGCAAACCGAAGCGCTCGCTAATGAATTGAATACACTGT
ATCAAAGCGTGATGGACTCACTAGGCAGCGAGGATGCGCGCTATATTCAGCGTGTTTATGGGACGGTAGTATATAGCGAG
GTAATTTCACGGGCATTACTGGCATTTTCTGGGCAATTATCATCAAAACGCAGCAAACTTGGCGTTTGGCTACTTGGCAC
ATCCTTACTGAGTTTTAGTAAAATTTTAAACAATATGGAACTTGGCCATAACGTTATGCATGGTCAGTATGACTGGATGC
AGCACCCTCATCTTAACAGCCAAAAGTTCGATTGGGATATCGTTTGCCCTGCGCCGCTATGGCAGCATTCGCATAACTAT
CTACATCATACTTTTACCAATATCGTCGGTCGCGACCATGACGTCGGCTATCACTTGATTCGCGTGACTGATGAGCAGCC
TTGGACGCCAAGCGATCGTTATAACTTATTTAAGACGATGATATTGGCATTAGGCTTTGAATGGGCAGTCGCTTTCCATG
ATATCCAAATCAGTGTTGACGAATACGCAGATAGGCCGCAGCTGGCAGAAATAATGCAGCCAAAAGCTCGTGCCCTATTC
AGTAAAATCGCCCGGCAAGCGGGTAAAGATTATATGGCTTTTCCTGCGGTGGCAGGTCTGACATTAGGTCGTAGTAGTGC
AATGACAACCTTAAGCGGTAATATCACTGCCAATATTGCTCGTAATCTATGGACATGGGCGGTGATATTTTGTGGTCACT
TTACTGAGCAGGCGCATATTTATACCCAGCTTGATGCCAATGAGAGCAAAGGTGATTGGTACATACGCCAAATTCTCGGT
TCTAGTAATATTCAGGGTAATAAATGGTTTCATATTCTGACTGGTAATTTATCGCATCAGATTGAGCACCATATCTTTCC
GGATATGCCTGCTAGGCACTATGCGCAGATTGCACCAAACGTACAAGCCATCTGCGATAAATACGATTTAACCTATAATA
CTGGGCACTTTAGTCATCAATTTAAGCAAGTAATTGGACGCATTCGCCATTTTAGTAAACCAAGTAGCGATGAATGGCGC
GCTTACACACAATCGATATCAAATAATGATAGAAGCATTACCAACAAAAGCAGTAATAACCATGCCTCTAACAACGCTAC
TGAGACATTACGTGGTTTTAGAAGGTTTCTCCCTCAGGTTGTGCGCCAAGCTATGTTTTATGCCTGA

Upstream 100 bases:

>100_bases
CATAAACATTTATTTGTAATGTTTATTAAAACTGACACCGATGATTAAACCGAACGTTGTGCTTACGATTTATTGATGCA
CCTTCGGATAAGGACTATCT

Downstream 100 bases:

>100_bases
TTTTTTATTAACGAGACTGGCATAGTTTTTAAGCTTCAACAGAACCTTTAGAATAGAAGCCTGTTAAAAATATTAACATT
TGCCCTATCTACTCTTACGC

Product: fatty acid desaturase

Products: NA

Alternate protein names: Delta(9)-desaturase; Stearoyl-CoA desaturase [H]

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MRLLLPIFKAKSAVSTITSLVDAPFKTTRYPTLTGTPLPKVQTEALANELNTLYQSVMDSLGSEDARYIQRVYGTVVYSE
VISRALLAFSGQLSSKRSKLGVWLLGTSLLSFSKILNNMELGHNVMHGQYDWMQHPHLNSQKFDWDIVCPAPLWQHSHNY
LHHTFTNIVGRDHDVGYHLIRVTDEQPWTPSDRYNLFKTMILALGFEWAVAFHDIQISVDEYADRPQLAEIMQPKARALF
SKIARQAGKDYMAFPAVAGLTLGRSSAMTTLSGNITANIARNLWTWAVIFCGHFTEQAHIYTQLDANESKGDWYIRQILG
SSNIQGNKWFHILTGNLSHQIEHHIFPDMPARHYAQIAPNVQAICDKYDLTYNTGHFSHQFKQVIGRIRHFSKPSSDEWR
AYTQSISNNDRSITNKSSNNHASNNATETLRGFRRFLPQVVRQAMFYA

Sequences:

>Translated_448_residues
MRLLLPIFKAKSAVSTITSLVDAPFKTTRYPTLTGTPLPKVQTEALANELNTLYQSVMDSLGSEDARYIQRVYGTVVYSE
VISRALLAFSGQLSSKRSKLGVWLLGTSLLSFSKILNNMELGHNVMHGQYDWMQHPHLNSQKFDWDIVCPAPLWQHSHNY
LHHTFTNIVGRDHDVGYHLIRVTDEQPWTPSDRYNLFKTMILALGFEWAVAFHDIQISVDEYADRPQLAEIMQPKARALF
SKIARQAGKDYMAFPAVAGLTLGRSSAMTTLSGNITANIARNLWTWAVIFCGHFTEQAHIYTQLDANESKGDWYIRQILG
SSNIQGNKWFHILTGNLSHQIEHHIFPDMPARHYAQIAPNVQAICDKYDLTYNTGHFSHQFKQVIGRIRHFSKPSSDEWR
AYTQSISNNDRSITNKSSNNHASNNATETLRGFRRFLPQVVRQAMFYA
>Mature_448_residues
MRLLLPIFKAKSAVSTITSLVDAPFKTTRYPTLTGTPLPKVQTEALANELNTLYQSVMDSLGSEDARYIQRVYGTVVYSE
VISRALLAFSGQLSSKRSKLGVWLLGTSLLSFSKILNNMELGHNVMHGQYDWMQHPHLNSQKFDWDIVCPAPLWQHSHNY
LHHTFTNIVGRDHDVGYHLIRVTDEQPWTPSDRYNLFKTMILALGFEWAVAFHDIQISVDEYADRPQLAEIMQPKARALF
SKIARQAGKDYMAFPAVAGLTLGRSSAMTTLSGNITANIARNLWTWAVIFCGHFTEQAHIYTQLDANESKGDWYIRQILG
SSNIQGNKWFHILTGNLSHQIEHHIFPDMPARHYAQIAPNVQAICDKYDLTYNTGHFSHQFKQVIGRIRHFSKPSSDEWR
AYTQSISNNDRSITNKSSNNHASNNATETLRGFRRFLPQVVRQAMFYA

Specific function: Desaturates stearoyl-CoA to form oleoyl-CoA [H]

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable). Note=Has been shown to be membrane-associated but no reliable trans-membrane regions are predicted by bioinformatics tools [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: NA

Molecular weight: Translated: 51063; Mature: 51063

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLPIFKAKSAVSTITSLVDAPFKTTRYPTLTGTPLPKVQTEALANELNTLYQSVMDS
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LGSEDARYIQRVYGTVVYSEVISRALLAFSGQLSSKRSKLGVWLLGTSLLSFSKILNNME
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHCEEEEHHHHHHHHHHHHHHHH
LGHNVMHGQYDWMQHPHLNSQKFDWDIVCPAPLWQHSHNYLHHTFTNIVGRDHDVGYHLI
HCCHHHCCCHHHHCCCCCCCCCCCEEEECCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEE
RVTDEQPWTPSDRYNLFKTMILALGFEWAVAFHDIQISVDEYADRPQLAEIMQPKARALF
EEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEHHHHCCCCHHHHHHCHHHHHHH
SKIARQAGKDYMAFPAVAGLTLGRSSAMTTLSGNITANIARNLWTWAVIFCGHFTEQAHI
HHHHHHHCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEE
YTQLDANESKGDWYIRQILGSSNIQGNKWFHILTGNLSHQIEHHIFPDMPARHYAQIAPN
EEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHCCC
VQAICDKYDLTYNTGHFSHQFKQVIGRIRHFSKPSSDEWRAYTQSISNNDRSITNKSSNN
HHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
HASNNATETLRGFRRFLPQVVRQAMFYA
CCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRLLLPIFKAKSAVSTITSLVDAPFKTTRYPTLTGTPLPKVQTEALANELNTLYQSVMDS
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LGSEDARYIQRVYGTVVYSEVISRALLAFSGQLSSKRSKLGVWLLGTSLLSFSKILNNME
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHCEEEEHHHHHHHHHHHHHHHH
LGHNVMHGQYDWMQHPHLNSQKFDWDIVCPAPLWQHSHNYLHHTFTNIVGRDHDVGYHLI
HCCHHHCCCHHHHCCCCCCCCCCCEEEECCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEE
RVTDEQPWTPSDRYNLFKTMILALGFEWAVAFHDIQISVDEYADRPQLAEIMQPKARALF
EEECCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEHHHHCCCCHHHHHHCHHHHHHH
SKIARQAGKDYMAFPAVAGLTLGRSSAMTTLSGNITANIARNLWTWAVIFCGHFTEQAHI
HHHHHHHCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEE
YTQLDANESKGDWYIRQILGSSNIQGNKWFHILTGNLSHQIEHHIFPDMPARHYAQIAPN
EEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHCCC
VQAICDKYDLTYNTGHFSHQFKQVIGRIRHFSKPSSDEWRAYTQSISNNDRSITNKSSNN
HHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
HASNNATETLRGFRRFLPQVVRQAMFYA
CCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]