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The map label for this gene is ygcU [H]

Identifier: 93004846

GI number: 93004846

Start: 18487

End: 20238

Strand: Reverse

Name: ygcU [H]

Synonym: Pcryo_0015

Alternate gene names: 93004846

Gene position: 20238-18487 (Counterclockwise)

Preceding gene: 93004848

Following gene: 93004845

Centisome position: 0.66

GC content: 47.55

Gene sequence:

>1752_bases
ATGAGCAAAATTAAATCCTTTATGCGTAAAACGTCTAAAACTGCCTCTATCTCAACGACCTCTCCTATTGATAATACCAG
TTTAGATACGCTCTCAAAAATAGATACGTCCGTCACTACACCTGCCAACACACCTATAGAACAGACGCGCTGGAATGGTT
GGGGCAATGTCAGTATCAATAAAAAAGTCTCGCCACATGGCGCAAAACTGATCAAATCTCATATCGGTAAAACTAAAAAA
CTGTCTTCTGTCAGCTTACAAAAGGTGCTCAAAACCGTTCCAAAATCACGCTTACCTGCTGCTATGATTGAGCTTGATAC
TGTATCTGTCGATAACGAGGTAAGACTCAGACACGCCCGTGGTCAAAGCTTCCCAGATTGGATAGCCATGCATGGTGGCG
ACTTTAAAGTCTTTCCTGATGGCGTGGCGCATCCGCAATCAACCGCTGATGTCGAAACCTTATTAAAACTAGCAAGCGAG
TACGACCTGATCGTCATTCCTTTTGGCGGCGGTACCTCAGTCGCTGGTCATATCAACCCGCAAAAAGGCTCACGCCCCAT
ATTGACTATTGCTATGAGTAGGATGGATCAGCTGATTGACTTGGATATAGAGAGCCAAATTGCTACTTTTGGCGCAGGTA
CACAAGGTCCAGCAGTCGAGGCACAATTAAATGCCCACGGTTACCGTTTAGGACATTATCCGCAGTCGTGGGAGCTATCG
ACGCTTGGCGGCTGGATTGCAGCACGCTCTAGCGGTCAGCAGTCATTGGGTTACGGACGTATCGAGCAGATGTTTGCTGG
TGGTACGTTGGTCACGCCGCAAGGTGTACTCAATATCGCTGATATTCCAGCGTCAGCAGCAGGGCCTGATCTGCGTGAAA
TGATGATGGGTACTGAAGGCCGCGCCGGTATTTTTACCGAAGTCAAAATGCGCGTGCAGTCACAACCGGAAGAAGAGCTA
TTCAAAGTGGTATTTTTACCCAATTGGGAGGCGGGTAAAGAAGTGCTCAGACAAGCGGTACAAAAAAACATCCGCCTATC
GATGCTACGCCTGAGCAATGCGGTCGAGACTGATGCTCACCTACATTTAGGCACGACGCCCAGTCAATTTTTGGCAATCA
ACACCTATCTAAAAGCGCGCGGATTAGGTTCACAAAAAGTCATGCTGACTTATGGCCTATCAGGTGATAAAGCACAGAAT
GCGCTGGCACTGACGCAGTTTAAAAATCTGTTAAAGCAGCATGGGGGTATCAGTGGCAAGCTTGCCAATCTGATGGGTAA
GATATGGTCACATGGGCGTTTTAAATTTCCATATTTGCGCGGTACTTTGTGGGAGAAAGGCATCATGGTGGATACCTTTG
AGACCGCGACCAATTGGCATAATATCGACGAGCAAATGCAGCAGATGCAAGCAGCGGTGCAAACTGCACTGGCAGACGAA
GGCGAAGCCGTGATGGCATTTACGCATATCTCACATGTGTATAAGCAAGGTGCTAGCCTTTATACCACCTACTTCTTTAG
AGCGGCTAGAGATCACACCAGTACCTTAAGTCGCTGGCAAAAAATCAAGCATGCTGCCAGCTCAAGTCTGGCAAATGGCA
AAGCGACAATATCGCACCAGCATGGTGTCGGCCGTGACCATGTCCCTTACCTCACTGCTGAAAAGGGTAAGCTAGGTATT
CAGGTTACCCGTGATATGCTTAAAAGTCTGGACCCTGAGCAGCGTATGAATCCGGGTGTTTTGATTGAATAA

Upstream 100 bases:

>100_bases
TCGATAAAGAATAATATCCTCATTGCCTGATTATGGACAATGAGATAGCCACAGTAGCGACACTCAAACCGTGATTATAA
ATAGATAGGTTAAATTTACT

Downstream 100 bases:

>100_bases
TAACTTTACTCAAAAACCTTGTTTATAGTTAGTTTGGTTTAAGAGCGTTACAGCGCGGCTGGCATTGATTTTTCGCAGCC
TCTGTCGGCGTAGGCACAGC

Product: FAD linked oxidase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 583; Mature: 582

Protein sequence:

>583_residues
MSKIKSFMRKTSKTASISTTSPIDNTSLDTLSKIDTSVTTPANTPIEQTRWNGWGNVSINKKVSPHGAKLIKSHIGKTKK
LSSVSLQKVLKTVPKSRLPAAMIELDTVSVDNEVRLRHARGQSFPDWIAMHGGDFKVFPDGVAHPQSTADVETLLKLASE
YDLIVIPFGGGTSVAGHINPQKGSRPILTIAMSRMDQLIDLDIESQIATFGAGTQGPAVEAQLNAHGYRLGHYPQSWELS
TLGGWIAARSSGQQSLGYGRIEQMFAGGTLVTPQGVLNIADIPASAAGPDLREMMMGTEGRAGIFTEVKMRVQSQPEEEL
FKVVFLPNWEAGKEVLRQAVQKNIRLSMLRLSNAVETDAHLHLGTTPSQFLAINTYLKARGLGSQKVMLTYGLSGDKAQN
ALALTQFKNLLKQHGGISGKLANLMGKIWSHGRFKFPYLRGTLWEKGIMVDTFETATNWHNIDEQMQQMQAAVQTALADE
GEAVMAFTHISHVYKQGASLYTTYFFRAARDHTSTLSRWQKIKHAASSSLANGKATISHQHGVGRDHVPYLTAEKGKLGI
QVTRDMLKSLDPEQRMNPGVLIE

Sequences:

>Translated_583_residues
MSKIKSFMRKTSKTASISTTSPIDNTSLDTLSKIDTSVTTPANTPIEQTRWNGWGNVSINKKVSPHGAKLIKSHIGKTKK
LSSVSLQKVLKTVPKSRLPAAMIELDTVSVDNEVRLRHARGQSFPDWIAMHGGDFKVFPDGVAHPQSTADVETLLKLASE
YDLIVIPFGGGTSVAGHINPQKGSRPILTIAMSRMDQLIDLDIESQIATFGAGTQGPAVEAQLNAHGYRLGHYPQSWELS
TLGGWIAARSSGQQSLGYGRIEQMFAGGTLVTPQGVLNIADIPASAAGPDLREMMMGTEGRAGIFTEVKMRVQSQPEEEL
FKVVFLPNWEAGKEVLRQAVQKNIRLSMLRLSNAVETDAHLHLGTTPSQFLAINTYLKARGLGSQKVMLTYGLSGDKAQN
ALALTQFKNLLKQHGGISGKLANLMGKIWSHGRFKFPYLRGTLWEKGIMVDTFETATNWHNIDEQMQQMQAAVQTALADE
GEAVMAFTHISHVYKQGASLYTTYFFRAARDHTSTLSRWQKIKHAASSSLANGKATISHQHGVGRDHVPYLTAEKGKLGI
QVTRDMLKSLDPEQRMNPGVLIE
>Mature_582_residues
SKIKSFMRKTSKTASISTTSPIDNTSLDTLSKIDTSVTTPANTPIEQTRWNGWGNVSINKKVSPHGAKLIKSHIGKTKKL
SSVSLQKVLKTVPKSRLPAAMIELDTVSVDNEVRLRHARGQSFPDWIAMHGGDFKVFPDGVAHPQSTADVETLLKLASEY
DLIVIPFGGGTSVAGHINPQKGSRPILTIAMSRMDQLIDLDIESQIATFGAGTQGPAVEAQLNAHGYRLGHYPQSWELST
LGGWIAARSSGQQSLGYGRIEQMFAGGTLVTPQGVLNIADIPASAAGPDLREMMMGTEGRAGIFTEVKMRVQSQPEEELF
KVVFLPNWEAGKEVLRQAVQKNIRLSMLRLSNAVETDAHLHLGTTPSQFLAINTYLKARGLGSQKVMLTYGLSGDKAQNA
LALTQFKNLLKQHGGISGKLANLMGKIWSHGRFKFPYLRGTLWEKGIMVDTFETATNWHNIDEQMQQMQAAVQTALADEG
EAVMAFTHISHVYKQGASLYTTYFFRAARDHTSTLSRWQKIKHAASSSLANGKATISHQHGVGRDHVPYLTAEKGKLGIQ
VTRDMLKSLDPEQRMNPGVLIE

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI4501993, Length=564, Percent_Identity=26.7730496453901, Blast_Score=189, Evalue=5e-48,
Organism=Homo sapiens, GI37595756, Length=466, Percent_Identity=22.1030042918455, Blast_Score=80, Evalue=8e-15,
Organism=Escherichia coli, GI48994907, Length=487, Percent_Identity=26.694045174538, Blast_Score=137, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17556096, Length=574, Percent_Identity=25.9581881533101, Blast_Score=209, Evalue=4e-54,
Organism=Saccharomyces cerevisiae, GI6320027, Length=246, Percent_Identity=27.6422764227642, Blast_Score=91, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24653753, Length=480, Percent_Identity=27.7083333333333, Blast_Score=189, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 63818; Mature: 63687

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIKSFMRKTSKTASISTTSPIDNTSLDTLSKIDTSVTTPANTPIEQTRWNGWGNVSIN
CHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCEEEC
KKVSPHGAKLIKSHIGKTKKLSSVSLQKVLKTVPKSRLPAAMIELDTVSVDNEVRLRHAR
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHC
GQSFPDWIAMHGGDFKVFPDGVAHPQSTADVETLLKLASEYDLIVIPFGGGTSVAGHINP
CCCCCCHHEECCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCC
QKGSRPILTIAMSRMDQLIDLDIESQIATFGAGTQGPAVEAQLNAHGYRLGHYPQSWELS
CCCCCCEEHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCCCEEH
TLGGWIAARSSGQQSLGYGRIEQMFAGGTLVTPQGVLNIADIPASAAGPDLREMMMGTEG
HHCCHHHCCCCCCCCCCHHHHHHHHCCCEEECCCCCEEEECCCCCCCCCHHHHHHHCCCC
RAGIFTEVKMRVQSQPEEELFKVVFLPNWEAGKEVLRQAVQKNIRLSMLRLSNAVETDAH
CCCHHHHHHHHHHCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
LHLGTTPSQFLAINTYLKARGLGSQKVMLTYGLSGDKAQNALALTQFKNLLKQHGGISGK
EEECCCHHHHEEEEHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHH
LANLMGKIWSHGRFKFPYLRGTLWEKGIMVDTFETATNWHNIDEQMQQMQAAVQTALADE
HHHHHHHHHCCCCEECCHHHCHHHHCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCC
GEAVMAFTHISHVYKQGASLYTTYFFRAARDHTSTLSRWQKIKHAASSSLANGKATISHQ
CCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
HGVGRDHVPYLTAEKGKLGIQVTRDMLKSLDPEQRMNPGVLIE
CCCCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHCCCCCEEC
>Mature Secondary Structure 
SKIKSFMRKTSKTASISTTSPIDNTSLDTLSKIDTSVTTPANTPIEQTRWNGWGNVSIN
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCEEEC
KKVSPHGAKLIKSHIGKTKKLSSVSLQKVLKTVPKSRLPAAMIELDTVSVDNEVRLRHAR
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHC
GQSFPDWIAMHGGDFKVFPDGVAHPQSTADVETLLKLASEYDLIVIPFGGGTSVAGHINP
CCCCCCHHEECCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCC
QKGSRPILTIAMSRMDQLIDLDIESQIATFGAGTQGPAVEAQLNAHGYRLGHYPQSWELS
CCCCCCEEHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCCCEEH
TLGGWIAARSSGQQSLGYGRIEQMFAGGTLVTPQGVLNIADIPASAAGPDLREMMMGTEG
HHCCHHHCCCCCCCCCCHHHHHHHHCCCEEECCCCCEEEECCCCCCCCCHHHHHHHCCCC
RAGIFTEVKMRVQSQPEEELFKVVFLPNWEAGKEVLRQAVQKNIRLSMLRLSNAVETDAH
CCCHHHHHHHHHHCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
LHLGTTPSQFLAINTYLKARGLGSQKVMLTYGLSGDKAQNALALTQFKNLLKQHGGISGK
EEECCCHHHHEEEEHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHH
LANLMGKIWSHGRFKFPYLRGTLWEKGIMVDTFETATNWHNIDEQMQQMQAAVQTALADE
HHHHHHHHHCCCCEECCHHHCHHHHCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCC
GEAVMAFTHISHVYKQGASLYTTYFFRAARDHTSTLSRWQKIKHAASSSLANGKATISHQ
CCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
HGVGRDHVPYLTAEKGKLGIQVTRDMLKSLDPEQRMNPGVLIE
CCCCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]