Click here to switch to the map view.

The map label for this gene is 93004842

Identifier: 93004842

GI number: 93004842

Start: 12461

End: 13300

Strand: Reverse

Name: 93004842

Synonym: Pcryo_0011

Alternate gene names: NA

Gene position: 13300-12461 (Counterclockwise)

Preceding gene: 93004844

Following gene: 93004840

Centisome position: 0.43

GC content: 52.02

Gene sequence:

>840_bases
ATGATGAAAATGGACTTTTTACCAAACTTAGCACTCAAAACGTGTGCCCTTACTTTAGCCATCGCTGCCACCGCTTCATG
CACGACTATGGCAACAGGCGCTGACTATCAAACGTCAAATGCACAAACCACCGCAAACACTACTAGCACTACTGCCCTCG
CTCTTGGCAATACAGCCACTGCTGGCGGCAGCAATGATACTGTTGCTATCGGTAATATGGCAAATGCAGGACTTAATTCT
GCTACGGCTGTCGGTGGTCAAGCCAATGCCGCAGGTCTAGGCTCGACGTCTATCGGTTGGCAATCCAAAGCCACAGCTGA
ACGCGCGCAAGCCTTTGGTCATCTAGCCAATGCTAGTGGTGTTCGCTCTACCGCTGTTGGTGAAGCAGCCATGGCTGGTG
GCACTAACGATACCGTCGCTGTCGGTAATAAAGCCAATGCAGGTCTAAACTCCGCAACCGCTGTCGGTGGTGAAGCCAAT
GCCGCAGGTCTAGGCTCAACGTCCATCGGTTGGCAGTCTAAAGCCACTGCTGAACGCGCGCAAGCGTTTGGTCATCTAGC
CAATGCTAGTGGCGTACGCTCTACCGCAGTTGGTGAAGCGGCAGCCGCACAAGGTGCAAACTCGGTAGCGTTAGGCAATA
AATCTATGGCTGGCGGCATAAATAGCATCGCTATCGGTAACGGAGCAATGGCGGCGAAAAATAACCAAGTCGTCTTAGGT
AACGCCGGACAAGTGCAGTCTAGTACCGCAGCACAATCAGGTACTGTCAGAATCGTCACTATCGATGACAACGGCACGTT
AGGCACTATGATGGTGGACTACTACAAGTCGGCTAAATAG

Upstream 100 bases:

>100_bases
TATTTATGCCAGAGTACGCTGATATTGCAAGGATTGTGATCTATCAGCTTTTACCCAAACCCCCTACTAAGCCAAGATGG
CTTTTCTAAAAGGATTTAGC

Downstream 100 bases:

>100_bases
TCAGTGCCAAGCTACTAACGCTGGTGCAGTTATCAGCAGTTATACTCGATAAAATAATGAGACCTCGCGCTTGCGAGGTT
TTTGCTATTTGCGATTACGG

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MMKMDFLPNLALKTCALTLAIAATASCTTMATGADYQTSNAQTTANTTSTTALALGNTATAGGSNDTVAIGNMANAGLNS
ATAVGGQANAAGLGSTSIGWQSKATAERAQAFGHLANASGVRSTAVGEAAMAGGTNDTVAVGNKANAGLNSATAVGGEAN
AAGLGSTSIGWQSKATAERAQAFGHLANASGVRSTAVGEAAAAQGANSVALGNKSMAGGINSIAIGNGAMAAKNNQVVLG
NAGQVQSSTAAQSGTVRIVTIDDNGTLGTMMVDYYKSAK

Sequences:

>Translated_279_residues
MMKMDFLPNLALKTCALTLAIAATASCTTMATGADYQTSNAQTTANTTSTTALALGNTATAGGSNDTVAIGNMANAGLNS
ATAVGGQANAAGLGSTSIGWQSKATAERAQAFGHLANASGVRSTAVGEAAMAGGTNDTVAVGNKANAGLNSATAVGGEAN
AAGLGSTSIGWQSKATAERAQAFGHLANASGVRSTAVGEAAAAQGANSVALGNKSMAGGINSIAIGNGAMAAKNNQVVLG
NAGQVQSSTAAQSGTVRIVTIDDNGTLGTMMVDYYKSAK
>Mature_279_residues
MMKMDFLPNLALKTCALTLAIAATASCTTMATGADYQTSNAQTTANTTSTTALALGNTATAGGSNDTVAIGNMANAGLNS
ATAVGGQANAAGLGSTSIGWQSKATAERAQAFGHLANASGVRSTAVGEAAMAGGTNDTVAVGNKANAGLNSATAVGGEAN
AAGLGSTSIGWQSKATAERAQAFGHLANASGVRSTAVGEAAAAQGANSVALGNKSMAGGINSIAIGNGAMAAKNNQVVLG
NAGQVQSSTAAQSGTVRIVTIDDNGTLGTMMVDYYKSAK

Specific function: Unknown

COG id: COG5295

COG function: function code UW; Autotransporter adhesin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26943; Mature: 26943

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKMDFLPNLALKTCALTLAIAATASCTTMATGADYQTSNAQTTANTTSTTALALGNTAT
CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCCCEEEEEECCCCC
AGGSNDTVAIGNMANAGLNSATAVGGQANAAGLGSTSIGWQSKATAERAQAFGHLANASG
CCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
VRSTAVGEAAMAGGTNDTVAVGNKANAGLNSATAVGGEANAAGLGSTSIGWQSKATAERA
CCHHHCCHHHHCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHH
QAFGHLANASGVRSTAVGEAAAAQGANSVALGNKSMAGGINSIAIGNGAMAAKNNQVVLG
HHHHHHHCCCCCCHHHHCHHHHHCCCCEEEECCCHHCCCCCEEEECCCCEEECCCEEEEC
NAGQVQSSTAAQSGTVRIVTIDDNGTLGTMMVDYYKSAK
CCCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHHHHCCC
>Mature Secondary Structure
MMKMDFLPNLALKTCALTLAIAATASCTTMATGADYQTSNAQTTANTTSTTALALGNTAT
CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCCCEEEEEECCCCC
AGGSNDTVAIGNMANAGLNSATAVGGQANAAGLGSTSIGWQSKATAERAQAFGHLANASG
CCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
VRSTAVGEAAMAGGTNDTVAVGNKANAGLNSATAVGGEANAAGLGSTSIGWQSKATAERA
CCHHHCCHHHHCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHH
QAFGHLANASGVRSTAVGEAAAAQGANSVALGNKSMAGGINSIAIGNGAMAAKNNQVVLG
HHHHHHHCCCCCCHHHHCHHHHHCCCCEEEECCCHHCCCCCEEEECCCCEEECCCEEEEC
NAGQVQSSTAAQSGTVRIVTIDDNGTLGTMMVDYYKSAK
CCCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA