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The map label for this gene is ybbO [C]

Identifier: 92115393

GI number: 92115393

Start: 3654543

End: 3655463

Strand: Direct

Name: ybbO [C]

Synonym: Csal_3278

Alternate gene names: 92115393

Gene position: 3654543-3655463 (Clockwise)

Preceding gene: 92115392

Following gene: 92115415

Centisome position: 98.86

GC content: 70.03

Gene sequence:

>921_bases
ATGCACGATCAACCCCAGGCGACGGCGCCACTGGCCGTCGTGACCGGCGCCACCGCCGGGCTAGGACTCGAGACCGCCAA
GGGGCTCGCCGCCCACGGCTATCGCGTGATCGTGGCTGCGCGCAACGCGGACAAGGGCGCCTTGGCGTGCCATGCCATCC
GCACCCATGTCCCGCGCGCCACGGTCCGTCACGAAGCGCTCGACCTCGACAGCCTCGCCTCGGTACGCGACTTCGCCGCA
CGCCTGAACCAGGACGAATCCTCGCTGGCCCGTTTGATCAACAATGCCGGGATCATGGCCCTGCCACGCCTGGAGCGCAC
CCGGGATGGCTTCGAGCGACAATGGGGCGTCAACTTCCTGGGCCACTTCCTGCTCACCAGCGAACTGCTGCCGCTGCTCG
CCGCCGCGGCATCGCCACGCGTGGTGCAGCTATCCAGCCTCGCCCACCGGGGCGGACGCATCGCCTTCGACGACCCGAAC
GGCGAGGCGAACTACGATCCCTGGCAAGCCTATCGGCAATCCAAGCTCGCCATGCTGTTGTTCGCCCAGGCGCTGCAGAA
ACAAAGCGACGCCCGACAGTGGGGGCTCGTGAGCCTTGCCGCCCATCCCGGGCTGTCGCGTACCGCGCTGTTCGACGACG
GCGTGAGAAGCCGTCCGATCGTCGGCAGCGTCTTCAAGCTGGCCCTGCCGCTGATCAGTCAATCCGCCGCCGAGGGCGCC
CGCCCCATCCTGCACGCCGCGCTCAGCGACACGGTCGGCCCCGGCGATTACATCGGGCCGGACGGTCTGGGCGAAACCCG
TGGCGCCCCCAGGGCAGCGCATCGCGCCCGCCACGCACGCGACCCGGCGGTCGAGGCCCGCCTGTGGGAGCTTGCCTGCG
ACCTCACCGGTGCACGCTGGGATACCACGGCCCCCGCGTAA

Upstream 100 bases:

>100_bases
CCGGACGCATGAAGCAACCCGGTCAGATGTGGGTGCTGATGCCCAAATGACGACACGTCCCCGACCGGGCGTCGGGAAAA
AGCGCCAGGGAGGATGACCC

Downstream 100 bases:

>100_bases
CGGCCCTACAGGCCTTCCTCGAGCAATTGCGGGGCGAAGTAGGTCATGATCAGATCGGCCCCCGCGCGCCGCATGGAGCC
CAGCGTCTCGCGGATCACCG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MHDQPQATAPLAVVTGATAGLGLETAKGLAAHGYRVIVAARNADKGALACHAIRTHVPRATVRHEALDLDSLASVRDFAA
RLNQDESSLARLINNAGIMALPRLERTRDGFERQWGVNFLGHFLLTSELLPLLAAAASPRVVQLSSLAHRGGRIAFDDPN
GEANYDPWQAYRQSKLAMLLFAQALQKQSDARQWGLVSLAAHPGLSRTALFDDGVRSRPIVGSVFKLALPLISQSAAEGA
RPILHAALSDTVGPGDYIGPDGLGETRGAPRAAHRARHARDPAVEARLWELACDLTGARWDTTAPA

Sequences:

>Translated_306_residues
MHDQPQATAPLAVVTGATAGLGLETAKGLAAHGYRVIVAARNADKGALACHAIRTHVPRATVRHEALDLDSLASVRDFAA
RLNQDESSLARLINNAGIMALPRLERTRDGFERQWGVNFLGHFLLTSELLPLLAAAASPRVVQLSSLAHRGGRIAFDDPN
GEANYDPWQAYRQSKLAMLLFAQALQKQSDARQWGLVSLAAHPGLSRTALFDDGVRSRPIVGSVFKLALPLISQSAAEGA
RPILHAALSDTVGPGDYIGPDGLGETRGAPRAAHRARHARDPAVEARLWELACDLTGARWDTTAPA
>Mature_306_residues
MHDQPQATAPLAVVTGATAGLGLETAKGLAAHGYRVIVAARNADKGALACHAIRTHVPRATVRHEALDLDSLASVRDFAA
RLNQDESSLARLINNAGIMALPRLERTRDGFERQWGVNFLGHFLLTSELLPLLAAAASPRVVQLSSLAHRGGRIAFDDPN
GEANYDPWQAYRQSKLAMLLFAQALQKQSDARQWGLVSLAAHPGLSRTALFDDGVRSRPIVGSVFKLALPLISQSAAEGA
RPILHAALSDTVGPGDYIGPDGLGETRGAPRAAHRARHARDPAVEARLWELACDLTGARWDTTAPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI186928839, Length=298, Percent_Identity=39.261744966443, Blast_Score=168, Evalue=6e-42,
Organism=Homo sapiens, GI166795268, Length=292, Percent_Identity=37.6712328767123, Blast_Score=155, Evalue=4e-38,
Organism=Homo sapiens, GI225579078, Length=298, Percent_Identity=38.5906040268456, Blast_Score=150, Evalue=1e-36,
Organism=Homo sapiens, GI193804850, Length=300, Percent_Identity=33.6666666666667, Blast_Score=134, Evalue=8e-32,
Organism=Homo sapiens, GI19923931, Length=258, Percent_Identity=37.984496124031, Blast_Score=125, Evalue=4e-29,
Organism=Homo sapiens, GI10190746, Length=303, Percent_Identity=35.3135313531353, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI7706523, Length=250, Percent_Identity=35.6, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI146231950, Length=294, Percent_Identity=38.0952380952381, Blast_Score=107, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17558006, Length=271, Percent_Identity=29.1512915129151, Blast_Score=111, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI193207620, Length=296, Percent_Identity=30.0675675675676, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17505416, Length=209, Percent_Identity=33.4928229665072, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17532805, Length=291, Percent_Identity=29.8969072164948, Blast_Score=95, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17532791, Length=246, Percent_Identity=28.8617886178862, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71992402, Length=247, Percent_Identity=29.9595141700405, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI72001364, Length=251, Percent_Identity=32.6693227091633, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI32565532, Length=200, Percent_Identity=31.5, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17535059, Length=250, Percent_Identity=28.8, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324820, Length=257, Percent_Identity=32.6848249027237, Blast_Score=103, Evalue=3e-23,
Organism=Drosophila melanogaster, GI28573296, Length=254, Percent_Identity=43.7007874015748, Blast_Score=156, Evalue=2e-38,
Organism=Drosophila melanogaster, GI19921754, Length=211, Percent_Identity=41.2322274881517, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24656154, Length=315, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI19922628, Length=315, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI45554248, Length=201, Percent_Identity=43.2835820895522, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24640117, Length=201, Percent_Identity=43.2835820895522, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24586328, Length=247, Percent_Identity=37.6518218623482, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI22024069, Length=203, Percent_Identity=41.3793103448276, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI161076371, Length=247, Percent_Identity=37.6518218623482, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI20129347, Length=294, Percent_Identity=31.9727891156463, Blast_Score=114, Evalue=7e-26,
Organism=Drosophila melanogaster, GI45553409, Length=248, Percent_Identity=31.0483870967742, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24647948, Length=248, Percent_Identity=31.0483870967742, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24647946, Length=248, Percent_Identity=31.0483870967742, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24647931, Length=271, Percent_Identity=32.4723247232472, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 32674; Mature: 32674

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDQPQATAPLAVVTGATAGLGLETAKGLAAHGYRVIVAARNADKGALACHAIRTHVPRA
CCCCCCCCCCEEEEECCCCCCCHHHHCCHHHCCEEEEEEECCCCCCHHHHHHHHHHCCHH
TVRHEALDLDSLASVRDFAARLNQDESSLARLINNAGIMALPRLERTRDGFERQWGVNFL
HHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHH
GHFLLTSELLPLLAAAASPRVVQLSSLAHRGGRIAFDDPNGEANYDPWQAYRQSKLAMLL
HHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
FAQALQKQSDARQWGLVSLAAHPGLSRTALFDDGVRSRPIVGSVFKLALPLISQSAAEGA
HHHHHHHHHHHHHHCEEEEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RPILHAALSDTVGPGDYIGPDGLGETRGAPRAAHRARHARDPAVEARLWELACDLTGARW
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
DTTAPA
CCCCCC
>Mature Secondary Structure
MHDQPQATAPLAVVTGATAGLGLETAKGLAAHGYRVIVAARNADKGALACHAIRTHVPRA
CCCCCCCCCCEEEEECCCCCCCHHHHCCHHHCCEEEEEEECCCCCCHHHHHHHHHHCCHH
TVRHEALDLDSLASVRDFAARLNQDESSLARLINNAGIMALPRLERTRDGFERQWGVNFL
HHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHH
GHFLLTSELLPLLAAAASPRVVQLSSLAHRGGRIAFDDPNGEANYDPWQAYRQSKLAMLL
HHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
FAQALQKQSDARQWGLVSLAAHPGLSRTALFDDGVRSRPIVGSVFKLALPLISQSAAEGA
HHHHHHHHHHHHHHCEEEEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RPILHAALSDTVGPGDYIGPDGLGETRGAPRAAHRARHARDPAVEARLWELACDLTGARW
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
DTTAPA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]