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The map label for this gene is ybiO [H]

Identifier: 92115219

GI number: 92115219

Start: 3456518

End: 3458890

Strand: Direct

Name: ybiO [H]

Synonym: Csal_3104

Alternate gene names: 92115219

Gene position: 3456518-3458890 (Clockwise)

Preceding gene: 92115218

Following gene: 92115225

Centisome position: 93.5

GC content: 64.1

Gene sequence:

>2373_bases
GTGCCGACTCTACGCCTCGATACGTGGCTCAGCCGGTGGTTGCTGCTGTGCCTGCTCTTCGTGATGGCACCGGCGCTGGC
TCAGCAGGACACCGCCCCCGCTGACGCCGATGCCCCCGCCTATTCGACGTTGGCCGACATGCTCGAAAACGAGCAGACGC
GCCAGACAATCATCGATCAGCTGCGCGCCCAGGCGGCTCAGGAAAACGCCTTGGCCGTCGAGGGCGCTCCCTCGCGCGAA
GAGATCGCCAATGCCGCACCCAGCGACCAGACAGCCAGTCAGGTGTCCTTTCCCCGCCGCCTCGCCGAGGCTACCAGCAG
CATCGCGGGCGATCTGGGCGGACAATTCAAGAGCCTGGCGGCTGCGCTGGGCGGATTGTTCGGCAGTGGCGAGGCGCGTG
CCAGCGGCCCGAGCTTCGACACAGGCGCCTTCTTGATCGCCGTGCTCAACCTGCTGTTCGTCGTGGCAGGCGCCTTCGTG
GCCCTGTTCGTGCTGCGTAAGCTCGCATCGCCCTTGTTCGGCAAGCTGAGCCAGTGGTCGTCGCAGAACACCGAGAAAAG
TGCGCTACTGCGTACCATCGTCGCGGTCGTGCTTGCCGCCGTGATCGACGTGGCCGTGGTGGTGCTGGCCTATATCGCCG
GCAACCTGCTGGCGACGTTCGCCATCGGCGAGGCCGGCAACATGGAGACGCGCTTCTCGCTGTTCCTCAACGCCTTCTTG
ATGATCGAACTGTTCAAGGCGGCCCTGCGCATGCTGTTCTCGTCGCAATATGCCGGTCTGCGCCTGATGCCCATCGCCTC
GCCCCAAGCCGAGTATTGCAACCGTTTCCTGGCCCGCCTGGCAGGCTTCATCGGTTACGGCATGCTGGTGATCGTCCCCA
TCGTCAATTACAACCTTTCGACGGCCCTCGGCCAGGGACTGGGCACGGTGATCATGCTGATGGCCTTGATCTATGCCGCC
ACGGTGATCCTCAAGAGCCGCGTGACACTGCGCGACGCCCTGATGCAGCGCGCCGAGAAGGCCGACATGAGCGCCTCGCG
CTTCGCCTTGCGGCTGCTGGGCCGTGTCTGGCATGTGCTGGCCCTGGCCTACGCCCTGGTGGTTTTCGCCGTCACGGTCC
TGCACCCCGAGACAGCGTTGCCCTACGTGCTGCTGGCCACGCTCAAGACCATCGTCATCGTCGGCATCGGCATGCTGGTA
TCGGGCGTGCTGACCCAGTTGATCGGTCGCCGCATTCGTCTGACCGGCGATATCCAGCGGCGTCTGCCTCTGCTGGAAAA
GCGCCTCAATGCCTACGTGCCCACGTCCCTCAAGGTCATCCGCGCGATCATCCTGATCGTCGTGGCCATGTTCGTGCTCA
GCGCTTGGCAGGTATTCGACCTCGCCGCCTGGTACGCCTCCGAGGCGGGCGCTCATCTCGTCGGCACCACGCTGAACGTG
GTCATCATCCTGCTGGTTGCCGCCGTGGTATGGGTCGGTCTCGCCAGCCTCATCGAAAACCGCCTGAGTGCGGAAACCGG
TGCGGGCGAACCCTCGGCACGCGCCAAGACGCTGCTCTCGCTATTCCGCAACGCCCTGGCGATCGCCTTGATCACCATGA
CGGCGATGATCGTGCTGGCCGAGATCGGCATCAACATCGGCCCGTTGATCGCCGGTGCCGGGGTGCTGGGTCTGGCCATC
GGCTTCGGCTCGCAGAAACTGGTGCAGGATGTCATCACCGGGGTCTTCATCCAGTTGGAGAATGCCATGAACACCGGCGA
CGTCGTCACCGTCGGCGGCACCACCGGCACGGCGGAGCGCATCAGCATTCGTTCGGTGGGGATCCGCGATCTGTCGGGCA
CCTACCACATCGTACCGTTCTCCTCGGTGGATACCGTCTCCAACTACATGCGTGAATTCGGTAATCACGTCGGCGAATAT
GGCATTGCCTACCGCGAGAACATCGACGATGCCATCGAACAGCTGCAGGCCGCCTTCGAAGCCCTCAAGGAAAGCGAGCA
CGGCCACAAGCTGCTCGAGCCGCTCAGCGTGGCCGGTGTCACCGCACTGGCCGACAGCTCGGTCAACATCCGCGTGATCA
TCAAGACCACGCCGGGCGACCAGTGGGCTGTGGGTCGTGCCTACAACCGCCTGGTCAAGATGTACTTCGACGCCGCCGGC
ATCGAGATTCCATTCCCGCACACCACGCTCTACTTCGGGCAGGAGAAGGACGGTAGCGCCCCGCCGGCCAATTTGCGCAT
CCTGTCCCAGAAGGCCGACGTGGTGGACAGCCAGTCACCCTCCGGCAACGTGTCGCTCTCGCCCGATGCCCCATCGGACG
AGAACACGAATCCCGAGCATACCAAGCCGGACAACGACGAGGCCCCGAACTAA

Upstream 100 bases:

>100_bases
TGCTCGACGCTCGGCGACGAGCCACCTAGTGTTATCATTGCCAGGCAAATTCATCATAAACGATGTGGCTTCGCCACTTT
CCGTACAAGGAGGTCAATGC

Downstream 100 bases:

>100_bases
GCCCGGCGCGTCGCCGCATTCACGGCGACGCCTCGACGTCAAAGGGCCGCCCCTGCCGGGGCGGCCCTTTTTTTCGGGCA
CGGCCTTTCTCGGTCATGGC

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 790; Mature: 789

Protein sequence:

>790_residues
MPTLRLDTWLSRWLLLCLLFVMAPALAQQDTAPADADAPAYSTLADMLENEQTRQTIIDQLRAQAAQENALAVEGAPSRE
EIANAAPSDQTASQVSFPRRLAEATSSIAGDLGGQFKSLAAALGGLFGSGEARASGPSFDTGAFLIAVLNLLFVVAGAFV
ALFVLRKLASPLFGKLSQWSSQNTEKSALLRTIVAVVLAAVIDVAVVVLAYIAGNLLATFAIGEAGNMETRFSLFLNAFL
MIELFKAALRMLFSSQYAGLRLMPIASPQAEYCNRFLARLAGFIGYGMLVIVPIVNYNLSTALGQGLGTVIMLMALIYAA
TVILKSRVTLRDALMQRAEKADMSASRFALRLLGRVWHVLALAYALVVFAVTVLHPETALPYVLLATLKTIVIVGIGMLV
SGVLTQLIGRRIRLTGDIQRRLPLLEKRLNAYVPTSLKVIRAIILIVVAMFVLSAWQVFDLAAWYASEAGAHLVGTTLNV
VIILLVAAVVWVGLASLIENRLSAETGAGEPSARAKTLLSLFRNALAIALITMTAMIVLAEIGINIGPLIAGAGVLGLAI
GFGSQKLVQDVITGVFIQLENAMNTGDVVTVGGTTGTAERISIRSVGIRDLSGTYHIVPFSSVDTVSNYMREFGNHVGEY
GIAYRENIDDAIEQLQAAFEALKESEHGHKLLEPLSVAGVTALADSSVNIRVIIKTTPGDQWAVGRAYNRLVKMYFDAAG
IEIPFPHTTLYFGQEKDGSAPPANLRILSQKADVVDSQSPSGNVSLSPDAPSDENTNPEHTKPDNDEAPN

Sequences:

>Translated_790_residues
MPTLRLDTWLSRWLLLCLLFVMAPALAQQDTAPADADAPAYSTLADMLENEQTRQTIIDQLRAQAAQENALAVEGAPSRE
EIANAAPSDQTASQVSFPRRLAEATSSIAGDLGGQFKSLAAALGGLFGSGEARASGPSFDTGAFLIAVLNLLFVVAGAFV
ALFVLRKLASPLFGKLSQWSSQNTEKSALLRTIVAVVLAAVIDVAVVVLAYIAGNLLATFAIGEAGNMETRFSLFLNAFL
MIELFKAALRMLFSSQYAGLRLMPIASPQAEYCNRFLARLAGFIGYGMLVIVPIVNYNLSTALGQGLGTVIMLMALIYAA
TVILKSRVTLRDALMQRAEKADMSASRFALRLLGRVWHVLALAYALVVFAVTVLHPETALPYVLLATLKTIVIVGIGMLV
SGVLTQLIGRRIRLTGDIQRRLPLLEKRLNAYVPTSLKVIRAIILIVVAMFVLSAWQVFDLAAWYASEAGAHLVGTTLNV
VIILLVAAVVWVGLASLIENRLSAETGAGEPSARAKTLLSLFRNALAIALITMTAMIVLAEIGINIGPLIAGAGVLGLAI
GFGSQKLVQDVITGVFIQLENAMNTGDVVTVGGTTGTAERISIRSVGIRDLSGTYHIVPFSSVDTVSNYMREFGNHVGEY
GIAYRENIDDAIEQLQAAFEALKESEHGHKLLEPLSVAGVTALADSSVNIRVIIKTTPGDQWAVGRAYNRLVKMYFDAAG
IEIPFPHTTLYFGQEKDGSAPPANLRILSQKADVVDSQSPSGNVSLSPDAPSDENTNPEHTKPDNDEAPN
>Mature_789_residues
PTLRLDTWLSRWLLLCLLFVMAPALAQQDTAPADADAPAYSTLADMLENEQTRQTIIDQLRAQAAQENALAVEGAPSREE
IANAAPSDQTASQVSFPRRLAEATSSIAGDLGGQFKSLAAALGGLFGSGEARASGPSFDTGAFLIAVLNLLFVVAGAFVA
LFVLRKLASPLFGKLSQWSSQNTEKSALLRTIVAVVLAAVIDVAVVVLAYIAGNLLATFAIGEAGNMETRFSLFLNAFLM
IELFKAALRMLFSSQYAGLRLMPIASPQAEYCNRFLARLAGFIGYGMLVIVPIVNYNLSTALGQGLGTVIMLMALIYAAT
VILKSRVTLRDALMQRAEKADMSASRFALRLLGRVWHVLALAYALVVFAVTVLHPETALPYVLLATLKTIVIVGIGMLVS
GVLTQLIGRRIRLTGDIQRRLPLLEKRLNAYVPTSLKVIRAIILIVVAMFVLSAWQVFDLAAWYASEAGAHLVGTTLNVV
IILLVAAVVWVGLASLIENRLSAETGAGEPSARAKTLLSLFRNALAIALITMTAMIVLAEIGINIGPLIAGAGVLGLAIG
FGSQKLVQDVITGVFIQLENAMNTGDVVTVGGTTGTAERISIRSVGIRDLSGTYHIVPFSSVDTVSNYMREFGNHVGEYG
IAYRENIDDAIEQLQAAFEALKESEHGHKLLEPLSVAGVTALADSSVNIRVIIKTTPGDQWAVGRAYNRLVKMYFDAAGI
EIPFPHTTLYFGQEKDGSAPPANLRILSQKADVVDSQSPSGNVSLSPDAPSDENTNPEHTKPDNDEAPN

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=735, Percent_Identity=37.2789115646259, Blast_Score=430, Evalue=1e-121,
Organism=Escherichia coli, GI1789291, Length=219, Percent_Identity=27.8538812785388, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1786670, Length=334, Percent_Identity=23.9520958083832, Blast_Score=69, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 84387; Mature: 84256

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLRLDTWLSRWLLLCLLFVMAPALAQQDTAPADADAPAYSTLADMLENEQTRQTIIDQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHH
LRAQAAQENALAVEGAPSREEIANAAPSDQTASQVSFPRRLAEATSSIAGDLGGQFKSLA
HHHHHHHCCCEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
AALGGLFGSGEARASGPSFDTGAFLIAVLNLLFVVAGAFVALFVLRKLASPLFGKLSQWS
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SQNTEKSALLRTIVAVVLAAVIDVAVVVLAYIAGNLLATFAIGEAGNMETRFSLFLNAFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
MIELFKAALRMLFSSQYAGLRLMPIASPQAEYCNRFLARLAGFIGYGMLVIVPIVNYNLS
HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TALGQGLGTVIMLMALIYAATVILKSRVTLRDALMQRAEKADMSASRFALRLLGRVWHVL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ALAYALVVFAVTVLHPETALPYVLLATLKTIVIVGIGMLVSGVLTQLIGRRIRLTGDIQR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHH
RLPLLEKRLNAYVPTSLKVIRAIILIVVAMFVLSAWQVFDLAAWYASEAGAHLVGTTLNV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VIILLVAAVVWVGLASLIENRLSAETGAGEPSARAKTLLSLFRNALAIALITMTAMIVLA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIGINIGPLIAGAGVLGLAIGFGSQKLVQDVITGVFIQLENAMNTGDVVTVGGTTGTAER
HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHH
ISIRSVGIRDLSGTYHIVPFSSVDTVSNYMREFGNHVGEYGIAYRENIDDAIEQLQAAFE
EEEHHCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHH
ALKESEHGHKLLEPLSVAGVTALADSSVNIRVIIKTTPGDQWAVGRAYNRLVKMYFDAAG
HHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCC
IEIPFPHTTLYFGQEKDGSAPPANLRILSQKADVVDSQSPSGNVSLSPDAPSDENTNPEH
CCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHHHCCCCCCCCEEECCCCCCCCCCCCCC
TKPDNDEAPN
CCCCCCCCCC
>Mature Secondary Structure 
PTLRLDTWLSRWLLLCLLFVMAPALAQQDTAPADADAPAYSTLADMLENEQTRQTIIDQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHH
LRAQAAQENALAVEGAPSREEIANAAPSDQTASQVSFPRRLAEATSSIAGDLGGQFKSLA
HHHHHHHCCCEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
AALGGLFGSGEARASGPSFDTGAFLIAVLNLLFVVAGAFVALFVLRKLASPLFGKLSQWS
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SQNTEKSALLRTIVAVVLAAVIDVAVVVLAYIAGNLLATFAIGEAGNMETRFSLFLNAFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
MIELFKAALRMLFSSQYAGLRLMPIASPQAEYCNRFLARLAGFIGYGMLVIVPIVNYNLS
HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TALGQGLGTVIMLMALIYAATVILKSRVTLRDALMQRAEKADMSASRFALRLLGRVWHVL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ALAYALVVFAVTVLHPETALPYVLLATLKTIVIVGIGMLVSGVLTQLIGRRIRLTGDIQR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHH
RLPLLEKRLNAYVPTSLKVIRAIILIVVAMFVLSAWQVFDLAAWYASEAGAHLVGTTLNV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VIILLVAAVVWVGLASLIENRLSAETGAGEPSARAKTLLSLFRNALAIALITMTAMIVLA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIGINIGPLIAGAGVLGLAIGFGSQKLVQDVITGVFIQLENAMNTGDVVTVGGTTGTAER
HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHH
ISIRSVGIRDLSGTYHIVPFSSVDTVSNYMREFGNHVGEYGIAYRENIDDAIEQLQAAFE
EEEHHCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHH
ALKESEHGHKLLEPLSVAGVTALADSSVNIRVIIKTTPGDQWAVGRAYNRLVKMYFDAAG
HHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCC
IEIPFPHTTLYFGQEKDGSAPPANLRILSQKADVVDSQSPSGNVSLSPDAPSDENTNPEH
CCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHHHCCCCCCCCEEECCCCCCCCCCCCCC
TKPDNDEAPN
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]