Click here to switch to the map view.

The map label for this gene is oppC [H]

Identifier: 92115116

GI number: 92115116

Start: 3339636

End: 3340535

Strand: Direct

Name: oppC [H]

Synonym: Csal_3001

Alternate gene names: 92115116

Gene position: 3339636-3340535 (Clockwise)

Preceding gene: 92115115

Following gene: 92115117

Centisome position: 90.34

GC content: 65.22

Gene sequence:

>900_bases
ATGACCACCGATACGCTCCCCGACAACCGGCTTTCCCTGTCCGACGCCACGGCCGGCGAGAGTCTCGGCCGCGACGCCTG
GCGCCGACTCAAGCAGAACAGGGCAGCGATGGTCAGCCTGATCCTGCTGGTCGTGATCGCCGTCACCTGCCTGATCGGTC
CCTACCTGCTCCCTTGGGGACTCGCCGAAGTGGACTGGAACGCCTTCAGCGCCGCTCCCGGTCTCGATAGCGGCCATTTC
CTGGGGACCGATGCCAACGGCCGCGACCTGCTCACCCGCACGCTCTACGGCGGCCGCGTGTCGCTGTCGGTGGCGCTGGT
GGCCACGCTCGTCAGCCTGGTGATCGGGGTGCTCTACGGCGCCATCTCCGGCTACGTGGGCGGACGCCTGGACAACCTCA
TGATGCGCTTCGTCGACATCATGTATTCGCTGCCGTTCATGTTCCTGGTGATCCTGCTGATGGTCGTGTTCGGGCGCAAC
ATCTTCCTGATCTATGCCGCCATCGGCGCGGTCGAATGGCTCGACATGGCACGCATCGTGCGCGGCCAGACACTGGCCCT
CAAGCAGCGCGAGTTCATCGAGGCCGCTCACGCGCTGGGCGTGCGCGATCGCAAGATCGTCACCCGCCACCTGATCCCCA
ACGCCATCGGCCCGGTGATTGTCTATGTCACGCTGACGGTGCCCAAGGTCATCCTGCTCGAGAGCTTTCTGTCGTTTCTC
GGCCTCGGGGTGCAGGAGCCGCTGACCAGCTGGGGCGTGCTGATCTCCGAAGGGACCGACATGATGCAGAGCGCGCCATG
GCTGCTGCTGGTGCCGTCGCTGTTCCTCGCCACGACGCTGTTCTGTCTCAACTTCCTGGGCGACGGACTGCGCGATGCCC
TGGATCCCAAGACCCGTTAG

Upstream 100 bases:

>100_bases
TCTACGGGGCACTGATCGTGCTGATGAACCTGCTCGTCGACCTGCTCTATTCCGCGCTCGATCCGCAAATCCGCTACGAC
GACTGACCGGACCTCATGCC

Downstream 100 bases:

>100_bases
GAAAACACCATGTCCGACACGTTACTCGAAATCGACAACCTGACGGTCGACTTCCAACTGCCCACCGGCACGGTCTCGGC
GGTCAAGCACGTGAGCTTCT

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTTDTLPDNRLSLSDATAGESLGRDAWRRLKQNRAAMVSLILLVVIAVTCLIGPYLLPWGLAEVDWNAFSAAPGLDSGHF
LGTDANGRDLLTRTLYGGRVSLSVALVATLVSLVIGVLYGAISGYVGGRLDNLMMRFVDIMYSLPFMFLVILLMVVFGRN
IFLIYAAIGAVEWLDMARIVRGQTLALKQREFIEAAHALGVRDRKIVTRHLIPNAIGPVIVYVTLTVPKVILLESFLSFL
GLGVQEPLTSWGVLISEGTDMMQSAPWLLLVPSLFLATTLFCLNFLGDGLRDALDPKTR

Sequences:

>Translated_299_residues
MTTDTLPDNRLSLSDATAGESLGRDAWRRLKQNRAAMVSLILLVVIAVTCLIGPYLLPWGLAEVDWNAFSAAPGLDSGHF
LGTDANGRDLLTRTLYGGRVSLSVALVATLVSLVIGVLYGAISGYVGGRLDNLMMRFVDIMYSLPFMFLVILLMVVFGRN
IFLIYAAIGAVEWLDMARIVRGQTLALKQREFIEAAHALGVRDRKIVTRHLIPNAIGPVIVYVTLTVPKVILLESFLSFL
GLGVQEPLTSWGVLISEGTDMMQSAPWLLLVPSLFLATTLFCLNFLGDGLRDALDPKTR
>Mature_298_residues
TTDTLPDNRLSLSDATAGESLGRDAWRRLKQNRAAMVSLILLVVIAVTCLIGPYLLPWGLAEVDWNAFSAAPGLDSGHFL
GTDANGRDLLTRTLYGGRVSLSVALVATLVSLVIGVLYGAISGYVGGRLDNLMMRFVDIMYSLPFMFLVILLMVVFGRNI
FLIYAAIGAVEWLDMARIVRGQTLALKQREFIEAAHALGVRDRKIVTRHLIPNAIGPVIVYVTLTVPKVILLESFLSFLG
LGVQEPLTSWGVLISEGTDMMQSAPWLLLVPSLFLATTLFCLNFLGDGLRDALDPKTR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=281, Percent_Identity=58.7188612099644, Blast_Score=316, Evalue=1e-87,
Organism=Escherichia coli, GI1787054, Length=277, Percent_Identity=33.9350180505415, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1787760, Length=269, Percent_Identity=32.3420074349442, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1789964, Length=280, Percent_Identity=35.7142857142857, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1788505, Length=220, Percent_Identity=39.0909090909091, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789889, Length=222, Percent_Identity=34.2342342342342, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787549, Length=280, Percent_Identity=26.0714285714286, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32651; Mature: 32520

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDTLPDNRLSLSDATAGESLGRDAWRRLKQNRAAMVSLILLVVIAVTCLIGPYLLPWG
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LAEVDWNAFSAAPGLDSGHFLGTDANGRDLLTRTLYGGRVSLSVALVATLVSLVIGVLYG
HHHCCCCHHCCCCCCCCCCEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AISGYVGGRLDNLMMRFVDIMYSLPFMFLVILLMVVFGRNIFLIYAAIGAVEWLDMARIV
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RGQTLALKQREFIEAAHALGVRDRKIVTRHLIPNAIGPVIVYVTLTVPKVILLESFLSFL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGVQEPLTSWGVLISEGTDMMQSAPWLLLVPSLFLATTLFCLNFLGDGLRDALDPKTR
CCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TTDTLPDNRLSLSDATAGESLGRDAWRRLKQNRAAMVSLILLVVIAVTCLIGPYLLPWG
CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LAEVDWNAFSAAPGLDSGHFLGTDANGRDLLTRTLYGGRVSLSVALVATLVSLVIGVLYG
HHHCCCCHHCCCCCCCCCCEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AISGYVGGRLDNLMMRFVDIMYSLPFMFLVILLMVVFGRNIFLIYAAIGAVEWLDMARIV
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RGQTLALKQREFIEAAHALGVRDRKIVTRHLIPNAIGPVIVYVTLTVPKVILLESFLSFL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGVQEPLTSWGVLISEGTDMMQSAPWLLLVPSLFLATTLFCLNFLGDGLRDALDPKTR
CCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]