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The map label for this gene is oppB [H]

Identifier: 92115115

GI number: 92115115

Start: 3338695

End: 3339621

Strand: Direct

Name: oppB [H]

Synonym: Csal_3000

Alternate gene names: 92115115

Gene position: 3338695-3339621 (Clockwise)

Preceding gene: 92115114

Following gene: 92115116

Centisome position: 90.32

GC content: 64.19

Gene sequence:

>927_bases
ATGCTGACCTATACCCTTAAGCGGCTGCTCATGGCGGTCCCCACCCTGCTGATCGTGATCACGATCTCGTTTTTCCTGAT
GCGCATCGCGCCGGGAGGCCCGTTCGACGGCGAGCGCCAGCTCCCCCCGGAAATCGAGGCCAACCTCAAGGCGGCCTATC
ACCTGGACGAACCCCTGCCGCAGCAATACCTGCGCTACATGGGCAACCTGCTGCAGGGCGACTTCGGGCCATCGTTCAAG
TACAAGGACTTCTCGGTGACCGAGCTGATCGCCCAGGGCTTTCCCGTGAGCCTCGAGATCGGCGGCCTGGCGATCCTGCT
CGCTCTCCTGGTGGGCCTGCCGCTAGGTGTCATCGCCGCCTTGCGACGCAACTCGGGCCTGGACTATGCGGTCATGGGGG
CGGCCTTAGCCAGCATCGCGGTTCCCAACTTCGTGATCGCGCCGATCCTGGCACTGGTCTTCGGGGTGTTGCTGGCCTGG
CTGCCGGCCGGCGGCTGGAACGGCGGCGCACTGCCCAACCTGATATTGCCGGTGATCGCGCTTTCGATTCAGCAAATCGC
CTATATCGCACGCATGATGCGCGCCAGCATGATCGAGGTGCTGGGCAGCCATTACATTCGCACCGCGCGAGCCAAGGGGC
TCTCCGAGCGCCAGGTGATCTGGCGCCACGCCATTCGCCCCGCCCTGCTGCCGGTGACCTCCTACCTGGGGCCGGCGATC
GCAGGCATCATCACCGGCTCGGTGGTGATCGAACAGATCTTCGGCATTCCCGGCATTGGCCGCTACTTCGTGCAGGCCGC
CCTCAACCGCGACTACACCCTGGTGATGGGCACGGTGGTGTTCTACGGGGCACTGATCGTGCTGATGAACCTGCTCGTCG
ACCTGCTCTATTCCGCGCTCGATCCGCAAATCCGCTACGACGACTGA

Upstream 100 bases:

>100_bases
GTCGCACCCGGAGAGGGGCCACGGAGCCCTCGCGCAGACTTGCCAGCGGAACGCCCCATCCCTTTAACGCTCGGCCCGAG
GGCTGCACCCGGACGATCCC

Downstream 100 bases:

>100_bases
CCGGACCTCATGCCATGACCACCGATACGCTCCCCGACAACCGGCTTTCCCTGTCCGACGCCACGGCCGGCGAGAGTCTC
GGCCGCGACGCCTGGCGCCG

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MLTYTLKRLLMAVPTLLIVITISFFLMRIAPGGPFDGERQLPPEIEANLKAAYHLDEPLPQQYLRYMGNLLQGDFGPSFK
YKDFSVTELIAQGFPVSLEIGGLAILLALLVGLPLGVIAALRRNSGLDYAVMGAALASIAVPNFVIAPILALVFGVLLAW
LPAGGWNGGALPNLILPVIALSIQQIAYIARMMRASMIEVLGSHYIRTARAKGLSERQVIWRHAIRPALLPVTSYLGPAI
AGIITGSVVIEQIFGIPGIGRYFVQAALNRDYTLVMGTVVFYGALIVLMNLLVDLLYSALDPQIRYDD

Sequences:

>Translated_308_residues
MLTYTLKRLLMAVPTLLIVITISFFLMRIAPGGPFDGERQLPPEIEANLKAAYHLDEPLPQQYLRYMGNLLQGDFGPSFK
YKDFSVTELIAQGFPVSLEIGGLAILLALLVGLPLGVIAALRRNSGLDYAVMGAALASIAVPNFVIAPILALVFGVLLAW
LPAGGWNGGALPNLILPVIALSIQQIAYIARMMRASMIEVLGSHYIRTARAKGLSERQVIWRHAIRPALLPVTSYLGPAI
AGIITGSVVIEQIFGIPGIGRYFVQAALNRDYTLVMGTVVFYGALIVLMNLLVDLLYSALDPQIRYDD
>Mature_308_residues
MLTYTLKRLLMAVPTLLIVITISFFLMRIAPGGPFDGERQLPPEIEANLKAAYHLDEPLPQQYLRYMGNLLQGDFGPSFK
YKDFSVTELIAQGFPVSLEIGGLAILLALLVGLPLGVIAALRRNSGLDYAVMGAALASIAVPNFVIAPILALVFGVLLAW
LPAGGWNGGALPNLILPVIALSIQQIAYIARMMRASMIEVLGSHYIRTARAKGLSERQVIWRHAIRPALLPVTSYLGPAI
AGIITGSVVIEQIFGIPGIGRYFVQAALNRDYTLVMGTVVFYGALIVLMNLLVDLLYSALDPQIRYDD

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=58.8235294117647, Blast_Score=387, Evalue=1e-109,
Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=36.7647058823529, Blast_Score=208, Evalue=3e-55,
Organism=Escherichia coli, GI1789888, Length=313, Percent_Identity=38.0191693290735, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=36.6559485530547, Blast_Score=194, Evalue=4e-51,
Organism=Escherichia coli, GI1788504, Length=363, Percent_Identity=29.4765840220386, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787550, Length=331, Percent_Identity=27.7945619335347, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787761, Length=292, Percent_Identity=33.9041095890411, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33445; Mature: 33445

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTYTLKRLLMAVPTLLIVITISFFLMRIAPGGPFDGERQLPPEIEANLKAAYHLDEPLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHCCCCCH
QQYLRYMGNLLQGDFGPSFKYKDFSVTELIAQGFPVSLEIGGLAILLALLVGLPLGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
LRRNSGLDYAVMGAALASIAVPNFVIAPILALVFGVLLAWLPAGGWNGGALPNLILPVIA
HHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LSIQQIAYIARMMRASMIEVLGSHYIRTARAKGLSERQVIWRHAIRPALLPVTSYLGPAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AGIITGSVVIEQIFGIPGIGRYFVQAALNRDYTLVMGTVVFYGALIVLMNLLVDLLYSAL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DPQIRYDD
CCCCCCCC
>Mature Secondary Structure
MLTYTLKRLLMAVPTLLIVITISFFLMRIAPGGPFDGERQLPPEIEANLKAAYHLDEPLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHCCCCCH
QQYLRYMGNLLQGDFGPSFKYKDFSVTELIAQGFPVSLEIGGLAILLALLVGLPLGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
LRRNSGLDYAVMGAALASIAVPNFVIAPILALVFGVLLAWLPAGGWNGGALPNLILPVIA
HHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LSIQQIAYIARMMRASMIEVLGSHYIRTARAKGLSERQVIWRHAIRPALLPVTSYLGPAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AGIITGSVVIEQIFGIPGIGRYFVQAALNRDYTLVMGTVVFYGALIVLMNLLVDLLYSAL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DPQIRYDD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]