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The map label for this gene is ydfH [H]

Identifier: 92114825

GI number: 92114825

Start: 3033977

End: 3034648

Strand: Direct

Name: ydfH [H]

Synonym: Csal_2707

Alternate gene names: 92114825

Gene position: 3033977-3034648 (Clockwise)

Preceding gene: 92114824

Following gene: 92114826

Centisome position: 82.07

GC content: 60.12

Gene sequence:

>672_bases
ATGGCGACTTACAAGACACGCGCGCAATTCGTCGCGGACGACCTGCGCGGACGCATACTGGGCGGTGAATTCAAGGGCGG
CACCCAACTGCGCCAGGATGCCCTGGCCAGGGACTACGACGTCAGCCGCATTCCTGTCCGCGAAGCCCTGCTGACCCTGG
AATCCGAAGGCCTGGTCGAGTTTCATGCCCACCGGGGCGCCTTCACCACCGAGCTTTCCGTGGCCAAGATTCGCGAACTG
TTCGATCTGCGCGTACTGCTCGAGACCTACGTTCTGCGCCATGCCATCAATGGCCTCACCGACGCGGATCTGAAAAAGGC
CGAAGACATCCTGCTCAAGTACGATGAAGCGCTGAATTCCGGCGGCGATATCGATAACTGGAGCGAGTACAACTTCGCCT
TCCACCAGGCGCTGTACGCGCCGGCAGACTTGCCTGAAACGCTGTCGCTGATCAGCCAGTTGAACACCAAGTCCGATCGC
TACATTCGCATGCAACTGGTCTATACGCAGGAAATCGAGAAGGCCGAACGAGAGCACCACGGCCTGCTCGAACTGGCCCG
CCAGCGCGATGCCGACAAGGCCTGCGAATTGTTGAAGACGCATATACAGGAAGCCTGCGAAGGCATCGTCGCGCTTCTGG
ACGAACGCGCGAAGCAGGTGGAGGCTCCCTAG

Upstream 100 bases:

>100_bases
GGCAACCCGGGACGGCACCGGTGCCGCCCTGCCTCCATCTTGGACATTCACGACAGGTTGTATACAGTATGCGAAATCCA
ATCTTCGGCAGGGGCCGGCC

Downstream 100 bases:

>100_bases
CGCCGCTCCTCTCGCCGCCCCTCTTTTCGAGCACGCCCTCCCCCTGACCTGCCAGCGATGCGCCACCGGGCGCGTCGGCA
CTGGCGTTCCCTGCTCCCCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MATYKTRAQFVADDLRGRILGGEFKGGTQLRQDALARDYDVSRIPVREALLTLESEGLVEFHAHRGAFTTELSVAKIREL
FDLRVLLETYVLRHAINGLTDADLKKAEDILLKYDEALNSGGDIDNWSEYNFAFHQALYAPADLPETLSLISQLNTKSDR
YIRMQLVYTQEIEKAEREHHGLLELARQRDADKACELLKTHIQEACEGIVALLDERAKQVEAP

Sequences:

>Translated_223_residues
MATYKTRAQFVADDLRGRILGGEFKGGTQLRQDALARDYDVSRIPVREALLTLESEGLVEFHAHRGAFTTELSVAKIREL
FDLRVLLETYVLRHAINGLTDADLKKAEDILLKYDEALNSGGDIDNWSEYNFAFHQALYAPADLPETLSLISQLNTKSDR
YIRMQLVYTQEIEKAEREHHGLLELARQRDADKACELLKTHIQEACEGIVALLDERAKQVEAP
>Mature_222_residues
ATYKTRAQFVADDLRGRILGGEFKGGTQLRQDALARDYDVSRIPVREALLTLESEGLVEFHAHRGAFTTELSVAKIRELF
DLRVLLETYVLRHAINGLTDADLKKAEDILLKYDEALNSGGDIDNWSEYNFAFHQALYAPADLPETLSLISQLNTKSDRY
IRMQLVYTQEIEKAEREHHGLLELARQRDADKACELLKTHIQEACEGIVALLDERAKQVEAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=203, Percent_Identity=27.0935960591133, Blast_Score=78, Evalue=5e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25300; Mature: 25169

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATYKTRAQFVADDLRGRILGGEFKGGTQLRQDALARDYDVSRIPVREALLTLESEGLVE
CCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHH
FHAHRGAFTTELSVAKIRELFDLRVLLETYVLRHAINGLTDADLKKAEDILLKYDEALNS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
GGDIDNWSEYNFAFHQALYAPADLPETLSLISQLNTKSDRYIRMQLVYTQEIEKAEREHH
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHH
GLLELARQRDADKACELLKTHIQEACEGIVALLDERAKQVEAP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATYKTRAQFVADDLRGRILGGEFKGGTQLRQDALARDYDVSRIPVREALLTLESEGLVE
CCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHH
FHAHRGAFTTELSVAKIRELFDLRVLLETYVLRHAINGLTDADLKKAEDILLKYDEALNS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
GGDIDNWSEYNFAFHQALYAPADLPETLSLISQLNTKSDRYIRMQLVYTQEIEKAEREHH
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHH
GLLELARQRDADKACELLKTHIQEACEGIVALLDERAKQVEAP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]