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The map label for this gene is ydhJ [H]

Identifier: 92114799

GI number: 92114799

Start: 3002693

End: 3003562

Strand: Direct

Name: ydhJ [H]

Synonym: Csal_2681

Alternate gene names: 92114799

Gene position: 3002693-3003562 (Clockwise)

Preceding gene: 92114798

Following gene: 92114800

Centisome position: 81.23

GC content: 64.02

Gene sequence:

>870_bases
ATGCGCACTTCGCTACGCATGCTCACCACACTCGTCATCGTGGCACTGGCCATCGCCGCCGGTGTCTGGCTATGGCATTA
CTACCTATATACGCCGTGGACACGCGACGGCCGTGTCCGCGCCGATATCGTGACCATCGCCCCGGACGTCTCCGGCTGGG
TGAGCGAGCTCTCGGTGGAAGATACGCAACGCGTGTCCCAGGGCGAGACCCTCTTCAAGATCAACCAGGCCCGCTATCGC
GCCGCCCTCGAGCAGGCCCAGGCCACCGTGGAACTGAACCGGGCACAGCTGGAGCTCAAGAAACACGAGGAAAGCCGCCG
CAACCGCCTGAGCAGCCGGGCGATCAGCAACGAGGATCGGGAGATCGCGCGGATCGACACCCGAGTCGCCCAGGCCAATC
TCGACGCGGCCGAGGCGCAGCTGGAGAGCGCGCAGATCGACCTGAAACGCACCGTGGTGACGGCACCCGCCGATGGACAC
ATCCTCAACCTTCGGCTCAGCGAGGGCAATTACGTCAACGCCGGCAATGCCGTCATGGCACTGGTCAAGGCCGATTCCTA
TTACGTGACCGGCTACTTCGAAGAGACCAAGATGTCGCGGATCGAGGAAGGCGACGTCGCCAGGATCACGCTGATGAACG
ACGACACCGAGCTACGCGGCCATGTCGCCGGCATCGGCCGAGGCATCGCCGACAGCAACACCTCACCCAACGACCAGCTG
TTGCCGCAGGTCGAGCCGACCTTCAACTGGGTACGGCTGGCACAACGCATCCCGGTGCGCATCGAACTCGACGACGTTCC
CGAGGGGACGCTGCTGAGTGCCGGAATGACGGCCACGATCCATGTCGTCGACGACACGGACGCAGACTGA

Upstream 100 bases:

>100_bases
ACATACGCCCTGGTTCGAAGCGTGGTTCGATGCCGCCCTGTTCGTCATCATCACGGCCATCGTCGCCTTTGTCTTTTCGC
CAACTGCCGGAATCGTCTAA

Downstream 100 bases:

>100_bases
GCCGCCCATGTCGCCCTGGATCGAGACCTACCTGACGCCCTCGAAGACATCGCTGCAGTTCGCCGCCAAGACCACCCTGG
CGATGCTGCTGGCGCTGTAC

Product: secretion protein HlyD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRTSLRMLTTLVIVALAIAAGVWLWHYYLYTPWTRDGRVRADIVTIAPDVSGWVSELSVEDTQRVSQGETLFKINQARYR
AALEQAQATVELNRAQLELKKHEESRRNRLSSRAISNEDREIARIDTRVAQANLDAAEAQLESAQIDLKRTVVTAPADGH
ILNLRLSEGNYVNAGNAVMALVKADSYYVTGYFEETKMSRIEEGDVARITLMNDDTELRGHVAGIGRGIADSNTSPNDQL
LPQVEPTFNWVRLAQRIPVRIELDDVPEGTLLSAGMTATIHVVDDTDAD

Sequences:

>Translated_289_residues
MRTSLRMLTTLVIVALAIAAGVWLWHYYLYTPWTRDGRVRADIVTIAPDVSGWVSELSVEDTQRVSQGETLFKINQARYR
AALEQAQATVELNRAQLELKKHEESRRNRLSSRAISNEDREIARIDTRVAQANLDAAEAQLESAQIDLKRTVVTAPADGH
ILNLRLSEGNYVNAGNAVMALVKADSYYVTGYFEETKMSRIEEGDVARITLMNDDTELRGHVAGIGRGIADSNTSPNDQL
LPQVEPTFNWVRLAQRIPVRIELDDVPEGTLLSAGMTATIHVVDDTDAD
>Mature_289_residues
MRTSLRMLTTLVIVALAIAAGVWLWHYYLYTPWTRDGRVRADIVTIAPDVSGWVSELSVEDTQRVSQGETLFKINQARYR
AALEQAQATVELNRAQLELKKHEESRRNRLSSRAISNEDREIARIDTRVAQANLDAAEAQLESAQIDLKRTVVTAPADGH
ILNLRLSEGNYVNAGNAVMALVKADSYYVTGYFEETKMSRIEEGDVARITLMNDDTELRGHVAGIGRGIADSNTSPNDQL
LPQVEPTFNWVRLAQRIPVRIELDDVPEGTLLSAGMTATIHVVDDTDAD

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=281, Percent_Identity=43.0604982206406, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1789637, Length=293, Percent_Identity=40.2730375426621, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1790519, Length=305, Percent_Identity=28.5245901639344, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789041, Length=301, Percent_Identity=25.2491694352159, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788711, Length=332, Percent_Identity=26.2048192771084, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1790024, Length=255, Percent_Identity=22.7450980392157, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 32159; Mature: 32159

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSLRMLTTLVIVALAIAAGVWLWHYYLYTPWTRDGRVRADIVTIAPDVSGWVSELSVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEEECCCCHHHHHHCCHH
DTQRVSQGETLFKINQARYRAALEQAQATVELNRAQLELKKHEESRRNRLSSRAISNEDR
HHHHHHCCCEEEEEHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EIARIDTRVAQANLDAAEAQLESAQIDLKRTVVTAPADGHILNLRLSEGNYVNAGNAVMA
HHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEEEECCCCCEEEEEEECCCCEEECCCEEEE
LVKADSYYVTGYFEETKMSRIEEGDVARITLMNDDTELRGHVAGIGRGIADSNTSPNDQL
EEECCCEEEEEEECHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCC
LPQVEPTFNWVRLAQRIPVRIELDDVPEGTLLSAGMTATIHVVDDTDAD
CCCCCCCHHHHHHHHHCCEEEEECCCCCCCEEECCCEEEEEEEECCCCC
>Mature Secondary Structure
MRTSLRMLTTLVIVALAIAAGVWLWHYYLYTPWTRDGRVRADIVTIAPDVSGWVSELSVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEEECCCCHHHHHHCCHH
DTQRVSQGETLFKINQARYRAALEQAQATVELNRAQLELKKHEESRRNRLSSRAISNEDR
HHHHHHCCCEEEEEHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EIARIDTRVAQANLDAAEAQLESAQIDLKRTVVTAPADGHILNLRLSEGNYVNAGNAVMA
HHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEEEECCCCCEEEEEEECCCCEEECCCEEEE
LVKADSYYVTGYFEETKMSRIEEGDVARITLMNDDTELRGHVAGIGRGIADSNTSPNDQL
EEECCCEEEEEEECHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCC
LPQVEPTFNWVRLAQRIPVRIELDDVPEGTLLSAGMTATIHVVDDTDAD
CCCCCCCHHHHHHHHHCCEEEEECCCCCCCEEECCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]