Click here to switch to the map view.

The map label for this gene is ycjP [C]

Identifier: 92114730

GI number: 92114730

Start: 2922903

End: 2923733

Strand: Direct

Name: ycjP [C]

Synonym: Csal_2612

Alternate gene names: 92114730

Gene position: 2922903-2923733 (Clockwise)

Preceding gene: 92114729

Following gene: 92114731

Centisome position: 79.07

GC content: 63.18

Gene sequence:

>831_bases
ATGACCGCCTCCAAGCGCTGGCTTCCCCTTACGTTCAAGATCGCCCTGCTGACGCTACTGCTGCTGTGGACGCTGATACC
GATCGTCTGGATGGTGCTGTCTTCCTTCAAGCCGAACACCATCATCACCGCCGATATCCCCCAGGTCTTCTTCACACCGA
CCCTGGAGCACTACGTCTCGCTGTTCAGCAGTGGCAACAGCCTCTGGCCCTACCTGCTCAACAGCCTGTTCATCGCCGGG
ACCTCGACGCTGATCGCCGTGGTGCTCGGCTGCATGGCCGGCTTCGGGCTGTCGCGGATCCGTATCAAGGGCAAGCAGCA
TCTGGCGTTCTGGATCATCAGCACCCGCATGGCGCCGATCGCGGCGGTGATCGTGCCGCTGTACCTGCTGTTCCGCTACC
TCTATCTGCTGGATACCCACGCCGGCCTGATCGTCGCCTACCTGAGCTTCAACCTGCCCTTCGCCATCTGGCTGATGACC
GCATTCTTCGACGACCTGCCGCCCGACCTGGAAGAGGCGGCGATGATCGACGGTGCCACCAAGTTCCAGGCGTTCCGCCA
CGTGGTGCTGCCGTTGATGACGCCGGGACTGGTGACGACCGCCATCCTGTGTTTCATCTTCGCCTGGAACGACTACGCCT
TCGCCCAGACGTTCTCCGGCCCCAGCACCCAGACGATTCCCATCGCCGCGGCACAGTTGCTGACCCAGACCGGCATCGAC
TGGGGCAAGCTGCTGGCGATCGGCACCATCGTGGTCTGCCCGATGGCGATCGCCGGGCTGCTGGTCAAGCGCTGGCTGGT
CCAGGGGCTGACCCTGGGCGCTGTGAAATGA

Upstream 100 bases:

>100_bases
ACCTGGGCTATGCCGCTGCCGTGGGCATCACCATGCTGGTGTTCTCGATCATGGTCGCCACGGCGTTCACGAAACTGCTC
AAACGCCAGGAGAAAGCCTC

Downstream 100 bases:

>100_bases
CCGATCCCACGACAACGCTTCTACAACGGACAGGGAGACAACCATGAACGTGATGTCGCAGTTCGACCTGAGCGGCAAGG
TCGCCGTCGTCACCGGCGGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MTASKRWLPLTFKIALLTLLLLWTLIPIVWMVLSSFKPNTIITADIPQVFFTPTLEHYVSLFSSGNSLWPYLLNSLFIAG
TSTLIAVVLGCMAGFGLSRIRIKGKQHLAFWIISTRMAPIAAVIVPLYLLFRYLYLLDTHAGLIVAYLSFNLPFAIWLMT
AFFDDLPPDLEEAAMIDGATKFQAFRHVVLPLMTPGLVTTAILCFIFAWNDYAFAQTFSGPSTQTIPIAAAQLLTQTGID
WGKLLAIGTIVVCPMAIAGLLVKRWLVQGLTLGAVK

Sequences:

>Translated_276_residues
MTASKRWLPLTFKIALLTLLLLWTLIPIVWMVLSSFKPNTIITADIPQVFFTPTLEHYVSLFSSGNSLWPYLLNSLFIAG
TSTLIAVVLGCMAGFGLSRIRIKGKQHLAFWIISTRMAPIAAVIVPLYLLFRYLYLLDTHAGLIVAYLSFNLPFAIWLMT
AFFDDLPPDLEEAAMIDGATKFQAFRHVVLPLMTPGLVTTAILCFIFAWNDYAFAQTFSGPSTQTIPIAAAQLLTQTGID
WGKLLAIGTIVVCPMAIAGLLVKRWLVQGLTLGAVK
>Mature_275_residues
TASKRWLPLTFKIALLTLLLLWTLIPIVWMVLSSFKPNTIITADIPQVFFTPTLEHYVSLFSSGNSLWPYLLNSLFIAGT
STLIAVVLGCMAGFGLSRIRIKGKQHLAFWIISTRMAPIAAVIVPLYLLFRYLYLLDTHAGLIVAYLSFNLPFAIWLMTA
FFDDLPPDLEEAAMIDGATKFQAFRHVVLPLMTPGLVTTAILCFIFAWNDYAFAQTFSGPSTQTIPIAAAQLLTQTGIDW
GKLLAIGTIVVCPMAIAGLLVKRWLVQGLTLGAVK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=281, Percent_Identity=33.0960854092527, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1790464, Length=213, Percent_Identity=36.150234741784, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789860, Length=280, Percent_Identity=27.1428571428571, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787368, Length=219, Percent_Identity=26.027397260274, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30471; Mature: 30340

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASKRWLPLTFKIALLTLLLLWTLIPIVWMVLSSFKPNTIITADIPQVFFTPTLEHYVS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCHHHHHH
LFSSGNSLWPYLLNSLFIAGTSTLIAVVLGCMAGFGLSRIRIKGKQHLAFWIISTRMAPI
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCHHEEEEEHHHHHHHH
AAVIVPLYLLFRYLYLLDTHAGLIVAYLSFNLPFAIWLMTAFFDDLPPDLEEAAMIDGAT
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHCCHH
KFQAFRHVVLPLMTPGLVTTAILCFIFAWNDYAFAQTFSGPSTQTIPIAAAQLLTQTGID
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
WGKLLAIGTIVVCPMAIAGLLVKRWLVQGLTLGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure 
TASKRWLPLTFKIALLTLLLLWTLIPIVWMVLSSFKPNTIITADIPQVFFTPTLEHYVS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCHHHHHH
LFSSGNSLWPYLLNSLFIAGTSTLIAVVLGCMAGFGLSRIRIKGKQHLAFWIISTRMAPI
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCHHEEEEEHHHHHHHH
AAVIVPLYLLFRYLYLLDTHAGLIVAYLSFNLPFAIWLMTAFFDDLPPDLEEAAMIDGAT
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHCCHH
KFQAFRHVVLPLMTPGLVTTAILCFIFAWNDYAFAQTFSGPSTQTIPIAAAQLLTQTGID
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
WGKLLAIGTIVVCPMAIAGLLVKRWLVQGLTLGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]