Click here to switch to the map view.

The map label for this gene is yfeR [C]

Identifier: 92114572

GI number: 92114572

Start: 2760006

End: 2760971

Strand: Direct

Name: yfeR [C]

Synonym: Csal_2454

Alternate gene names: 92114572

Gene position: 2760006-2760971 (Clockwise)

Preceding gene: 92114567

Following gene: 92114573

Centisome position: 74.66

GC content: 64.08

Gene sequence:

>966_bases
ATGGATAAACGCAATTCATGTTATTTATGCTTTGGATTCCAAAGTAGAATACTTGCCCGAGAGAGCGCGCTCATGGACAC
GCAAAGCCTGCAAGCCTTCCTCGCGGTCGCCGACCACGGCTCGTTCTCGCTCGCCGCGGAACAGCTCCATCTGACCCAGC
CCGCCGTCAGCAAGCGCATCGCGGGCCTCGAGGGGCAGGTCGGCGCCCAGCTCTTCGACCGACTCAACCGCCGCGTGACG
CTCACCGAAGCCGGTCGCACCCTGCTGCCGCGCGCCCGCCAGATCCTGGTGATGTTCGATGACAGCCGTCGCGCGCTGTC
CAATCTCAGCGGCGACATCAGCGGCAGCCTGACCATGGCCACCAGCCATCATGTCGGCCTGCACCGCCTGCCACCGCTGC
TCAAGGCCTATACCCAGGCCTACCCGGACGTACGCATGGACATGCGCTTTCTGGACTCGGAACAAGCCTATCAAGGCGTG
CTGGACGGCGATCTGGAGCTCGCCGTGGTCACGCTGGCCCCGGTCCCCGATCCGGCGTTGACGGTGGTGCCGGTGTGGAT
CGACCAGTTGCGCTTCGTCTGCGGACGCGAGCACGCCCTCGCCGGGCGCGACACGGTCGCGCTGTCGGCACTGTCCGATT
ATGACGCCGTGCTGCCGGGACATCTTACCTTCACCCGGGGCATCGTGGTGGACACTTTCGCCCGCGACGGCCTGCAGGTG
AACGTCTCGCTGTCCACCAATTACCTCGAAACCCTCAAGATGATGGTCGCCATCGGCCTGGGCTGGAGCGTATTGCCCGA
AACCATGATCGACGACGAGATCGAGGTCATTCCCATCGATCACCGTCCCATCCAGCGTCCGCTGGGCTATCTGTTCCACA
AGAGCCGGACGCTTTCCAATGCCGCACGGGCCATGCTCGAGATGCTGGATGCCGCCCGGGACACGACGGCCCGGCAATGG
GTGTGA

Upstream 100 bases:

>100_bases
AAGATTGGGCGATGACGCTCTATGTCGTCTTGCAACATCTCGCTGATGACGCGCCGCGATAAGCGGCGCAACCTCGATGT
CCCCAAGCCTAAGGGGGCTT

Downstream 100 bases:

>100_bases
CGCCTCATGTCGTGAAACATCAAGACAACCCATGAGATAGCCAGGGGGCTCGCCTTTTTTCGTCATGCCGATTTGATCGA
TAGCGACGCAAAAACGCCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MDKRNSCYLCFGFQSRILARESALMDTQSLQAFLAVADHGSFSLAAEQLHLTQPAVSKRIAGLEGQVGAQLFDRLNRRVT
LTEAGRTLLPRARQILVMFDDSRRALSNLSGDISGSLTMATSHHVGLHRLPPLLKAYTQAYPDVRMDMRFLDSEQAYQGV
LDGDLELAVVTLAPVPDPALTVVPVWIDQLRFVCGREHALAGRDTVALSALSDYDAVLPGHLTFTRGIVVDTFARDGLQV
NVSLSTNYLETLKMMVAIGLGWSVLPETMIDDEIEVIPIDHRPIQRPLGYLFHKSRTLSNAARAMLEMLDAARDTTARQW
V

Sequences:

>Translated_321_residues
MDKRNSCYLCFGFQSRILARESALMDTQSLQAFLAVADHGSFSLAAEQLHLTQPAVSKRIAGLEGQVGAQLFDRLNRRVT
LTEAGRTLLPRARQILVMFDDSRRALSNLSGDISGSLTMATSHHVGLHRLPPLLKAYTQAYPDVRMDMRFLDSEQAYQGV
LDGDLELAVVTLAPVPDPALTVVPVWIDQLRFVCGREHALAGRDTVALSALSDYDAVLPGHLTFTRGIVVDTFARDGLQV
NVSLSTNYLETLKMMVAIGLGWSVLPETMIDDEIEVIPIDHRPIQRPLGYLFHKSRTLSNAARAMLEMLDAARDTTARQW
V
>Mature_321_residues
MDKRNSCYLCFGFQSRILARESALMDTQSLQAFLAVADHGSFSLAAEQLHLTQPAVSKRIAGLEGQVGAQLFDRLNRRVT
LTEAGRTLLPRARQILVMFDDSRRALSNLSGDISGSLTMATSHHVGLHRLPPLLKAYTQAYPDVRMDMRFLDSEQAYQGV
LDGDLELAVVTLAPVPDPALTVVPVWIDQLRFVCGREHALAGRDTVALSALSDYDAVLPGHLTFTRGIVVDTFARDGLQV
NVSLSTNYLETLKMMVAIGLGWSVLPETMIDDEIEVIPIDHRPIQRPLGYLFHKSRTLSNAARAMLEMLDAARDTTARQW
V

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=285, Percent_Identity=28.7719298245614, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=26.7361111111111, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI157672245, Length=286, Percent_Identity=28.6713286713287, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=28.0821917808219, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787530, Length=254, Percent_Identity=28.3464566929134, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787879, Length=296, Percent_Identity=27.3648648648649, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=27.7027027027027, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788296, Length=239, Percent_Identity=26.7782426778243, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=27.710843373494, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790399, Length=295, Percent_Identity=24.0677966101695, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788887, Length=252, Percent_Identity=30.5555555555556, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1789506, Length=290, Percent_Identity=25.1724137931034, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787806, Length=272, Percent_Identity=26.1029411764706, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI2367136, Length=249, Percent_Identity=27.3092369477912, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082132, Length=293, Percent_Identity=24.5733788395904, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788626, Length=253, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789173, Length=167, Percent_Identity=31.7365269461078, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=32.4137931034483, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786713, Length=185, Percent_Identity=32.4324324324324, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787601, Length=193, Percent_Identity=26.4248704663212, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994962, Length=154, Percent_Identity=31.8181818181818, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=253, Percent_Identity=26.8774703557312, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786448, Length=166, Percent_Identity=30.1204819277108, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787949, Length=152, Percent_Identity=30.2631578947368, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787128, Length=133, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788706, Length=118, Percent_Identity=33.8983050847458, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081904, Length=295, Percent_Identity=22.7118644067797, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=161, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789440, Length=260, Percent_Identity=23.8461538461538, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1 [H]

EC number: NA

Molecular weight: Translated: 35513; Mature: 35513

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRNSCYLCFGFQSRILARESALMDTQSLQAFLAVADHGSFSLAAEQLHLTQPAVSKRI
CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHH
AGLEGQVGAQLFDRLNRRVTLTEAGRTLLPRARQILVMFDDSRRALSNLSGDISGSLTMA
CCCCCHHHHHHHHHHCCEEEEECCCCHHCCCCEEEEEEECCCHHHHHHCCCCCCCEEEEE
TSHHVGLHRLPPLLKAYTQAYPDVRMDMRFLDSEQAYQGVLDGDLELAVVTLAPVPDPAL
ECCCCCHHHCCHHHHHHHHHCCCHHHHHHHCCCHHHHCCCCCCCCEEEEEEEECCCCCCE
TVVPVWIDQLRFVCGREHALAGRDTVALSALSDYDAVLPGHLTFTRGIVVDTFARDGLQV
EEHHHHHHHHHHHHCCCCCCCCCCCEEEEHHCCCCCCCCCCEEEECCEEEEEECCCCEEE
NVSLSTNYLETLKMMVAIGLGWSVLPETMIDDEIEVIPIDHRPIQRPLGYLFHKSRTLSN
EEEECHHHHHHHHHHHHHCCCHHHCCHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
AARAMLEMLDAARDTTARQWV
HHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MDKRNSCYLCFGFQSRILARESALMDTQSLQAFLAVADHGSFSLAAEQLHLTQPAVSKRI
CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHH
AGLEGQVGAQLFDRLNRRVTLTEAGRTLLPRARQILVMFDDSRRALSNLSGDISGSLTMA
CCCCCHHHHHHHHHHCCEEEEECCCCHHCCCCEEEEEEECCCHHHHHHCCCCCCCEEEEE
TSHHVGLHRLPPLLKAYTQAYPDVRMDMRFLDSEQAYQGVLDGDLELAVVTLAPVPDPAL
ECCCCCHHHCCHHHHHHHHHCCCHHHHHHHCCCHHHHCCCCCCCCEEEEEEEECCCCCCE
TVVPVWIDQLRFVCGREHALAGRDTVALSALSDYDAVLPGHLTFTRGIVVDTFARDGLQV
EEHHHHHHHHHHHHCCCCCCCCCCCEEEEHHCCCCCCCCCCEEEECCEEEEEECCCCEEE
NVSLSTNYLETLKMMVAIGLGWSVLPETMIDDEIEVIPIDHRPIQRPLGYLFHKSRTLSN
EEEECHHHHHHHHHHHHHCCCHHHCCHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
AARAMLEMLDAARDTTARQWV
HHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9108283 [H]