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The map label for this gene is pecT [H]

Identifier: 92114501

GI number: 92114501

Start: 2672321

End: 2673205

Strand: Direct

Name: pecT [H]

Synonym: Csal_2383

Alternate gene names: 92114501

Gene position: 2672321-2673205 (Clockwise)

Preceding gene: 92114492

Following gene: 92114508

Centisome position: 72.29

GC content: 69.6

Gene sequence:

>885_bases
ATGGATACCGACCTGCTCCGCGCCTTCGTCACGGTCGCCGAGTGCGAGGGCTTCAGCGCCGCCGGCAAGGTGCTGCATCG
CACGCAGTCGGCCGTCAGCCTGCAGATCAAGCGGCTCGAGGATCAGATGGGCGAGTCACTGTTCGAGCGCACCAGCCGCA
GCGTGGTACTGACGCCGCCAGGCGGGCGCTTGCTGCCCTACGCGCGACACATCCTCAAGCTGCAGGACGAGGCGCGCCGG
GTGATGGGGGTGGACCGCCAGGGCGAACTGATCCGCCTGGGTACCTCGGAGGAACAGGCGAGCACCTACCTGCCCGAACT
GCTGCCGCGGTTCGCCGCCCGCTTTCCCGAGGTGCGCCTCGAAGTGAGCTGCAGCATCAGCGGCTCGCTGGTGCATGATT
TTCAGGAGGGGCTGCTGGACGTCGCGCTGGTGGTGCGCCACGGCCCCACCCAGACCGGCCGCCTGCTGGGCCGCGAGCCC
ATGGTGTGGGTGGTGGCCGAGGACCGCGCTATCGACGACTGGGAGATTCTGCCCCTGGCGCTGAATCCCGAGGGCTGCAT
CTTCCGCGCCCATGCGTTCGCCGCGCTGGGGCCCACCGAGCGGCGCTGGGACGTGCGCTACTCCAGCCGCTCCCCCACCG
GCATCAACCTGCCGGTGCAGGCCGGGCTGGCCGCCACGGTCAAGACCCCGCGCAGCGTCCCCGAGGGCTGTCGCATCGTC
GGCGAGGAAGAAGGTTTGCCGCCCCTCGGGCACGTCGAGATCGAAATGCACCGCACGCCCGGCCACTCCAGCGACGCCTT
CGTCGCCTTCTGCGACGAGCTGGAGCACATCGTCACCGCGACCGACTCGCTGGAGTCGCTGGAATACGTGGCCGCAGAAG
GCTGA

Upstream 100 bases:

>100_bases
TGCAAAGACGTTTCCAGTAACGTATGGACAGGGTAGAGAGGCAGGTTCAATAATAGAAATGAATGGTTAAGATCAAAAAG
ATTGCAAAGGCTCATAGATC

Downstream 100 bases:

>100_bases
ACGCAACACGGCGCCCCGCGGGGCGCCGTTGACGTTTGCGGGCGACGCGTTCAAAGGCGTCGCCATCAAGGCTGCCTAGG
AGCGCTCGGGCACCGGGGTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDTDLLRAFVTVAECEGFSAAGKVLHRTQSAVSLQIKRLEDQMGESLFERTSRSVVLTPPGGRLLPYARHILKLQDEARR
VMGVDRQGELIRLGTSEEQASTYLPELLPRFAARFPEVRLEVSCSISGSLVHDFQEGLLDVALVVRHGPTQTGRLLGREP
MVWVVAEDRAIDDWEILPLALNPEGCIFRAHAFAALGPTERRWDVRYSSRSPTGINLPVQAGLAATVKTPRSVPEGCRIV
GEEEGLPPLGHVEIEMHRTPGHSSDAFVAFCDELEHIVTATDSLESLEYVAAEG

Sequences:

>Translated_294_residues
MDTDLLRAFVTVAECEGFSAAGKVLHRTQSAVSLQIKRLEDQMGESLFERTSRSVVLTPPGGRLLPYARHILKLQDEARR
VMGVDRQGELIRLGTSEEQASTYLPELLPRFAARFPEVRLEVSCSISGSLVHDFQEGLLDVALVVRHGPTQTGRLLGREP
MVWVVAEDRAIDDWEILPLALNPEGCIFRAHAFAALGPTERRWDVRYSSRSPTGINLPVQAGLAATVKTPRSVPEGCRIV
GEEEGLPPLGHVEIEMHRTPGHSSDAFVAFCDELEHIVTATDSLESLEYVAAEG
>Mature_294_residues
MDTDLLRAFVTVAECEGFSAAGKVLHRTQSAVSLQIKRLEDQMGESLFERTSRSVVLTPPGGRLLPYARHILKLQDEARR
VMGVDRQGELIRLGTSEEQASTYLPELLPRFAARFPEVRLEVSCSISGSLVHDFQEGLLDVALVVRHGPTQTGRLLGREP
MVWVVAEDRAIDDWEILPLALNPEGCIFRAHAFAALGPTERRWDVRYSSRSPTGINLPVQAGLAATVKTPRSVPEGCRIV
GEEEGLPPLGHVEIEMHRTPGHSSDAFVAFCDELEHIVTATDSLESLEYVAAEG

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=267, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787806, Length=144, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI145693105, Length=120, Percent_Identity=35, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI48994962, Length=208, Percent_Identity=30.2884615384615, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082132, Length=201, Percent_Identity=31.3432835820896, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788887, Length=175, Percent_Identity=33.1428571428571, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790399, Length=185, Percent_Identity=29.1891891891892, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=150, Percent_Identity=30.6666666666667, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787879, Length=191, Percent_Identity=31.413612565445, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790208, Length=147, Percent_Identity=29.9319727891156, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32355; Mature: 32355

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTDLLRAFVTVAECEGFSAAGKVLHRTQSAVSLQIKRLEDQMGESLFERTSRSVVLTPP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GGRLLPYARHILKLQDEARRVMGVDRQGELIRLGTSEEQASTYLPELLPRFAARFPEVRL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEE
EVSCSISGSLVHDFQEGLLDVALVVRHGPTQTGRLLGREPMVWVVAEDRAIDDWEILPLA
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCCCCCEEEEEE
LNPEGCIFRAHAFAALGPTERRWDVRYSSRSPTGINLPVQAGLAATVKTPRSVPEGCRIV
ECCCCCEEEEEEHEECCCCCCEEEEEECCCCCCCCCCCHHCCCEEECCCCCCCCCCCEEE
GEEEGLPPLGHVEIEMHRTPGHSSDAFVAFCDELEHIVTATDSLESLEYVAAEG
CCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCC
>Mature Secondary Structure
MDTDLLRAFVTVAECEGFSAAGKVLHRTQSAVSLQIKRLEDQMGESLFERTSRSVVLTPP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GGRLLPYARHILKLQDEARRVMGVDRQGELIRLGTSEEQASTYLPELLPRFAARFPEVRL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEE
EVSCSISGSLVHDFQEGLLDVALVVRHGPTQTGRLLGREPMVWVVAEDRAIDDWEILPLA
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCCCCCEEEEEE
LNPEGCIFRAHAFAALGPTERRWDVRYSSRSPTGINLPVQAGLAATVKTPRSVPEGCRIV
ECCCCCEEEEEEHEECCCCCCEEEEEECCCCCCCCCCCHHCCCEEECCCCCCCCCCCEEE
GEEEGLPPLGHVEIEMHRTPGHSSDAFVAFCDELEHIVTATDSLESLEYVAAEG
CCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]