Click here to switch to the map view.

The map label for this gene is yhdH [H]

Identifier: 92113614

GI number: 92113614

Start: 1689706

End: 1691166

Strand: Direct

Name: yhdH [H]

Synonym: Csal_1490

Alternate gene names: 92113614

Gene position: 1689706-1691166 (Clockwise)

Preceding gene: 92113613

Following gene: 92113616

Centisome position: 45.71

GC content: 64.89

Gene sequence:

>1461_bases
ATGACGGCAAGACAGCAACCCAAAAATCTTTGGATCGGCCGCTGGGGCTTCGTGCTGGCGGCGACGGGCTCGGCAGTGGG
CCTTGGCAATATCTGGAAGTTTCCCTACATGACTGGCGAGTACGGCGGCGGCGCCTTCGTGCTCGTCTACCTGGCCTGCA
TTCTGTGCATCGGGATCCCCGCGATGATGACCGAGATCGCCTTCGGGCGGCGCGGGCGCGGGAGTCCCATCGATGCCGTC
AAGCGCGTGGCGCAGGAGTCCGGTCGCGGCAAGATCTGGTCCGGGTTCGGCTGGATGTCGATGCTCGCCGGGTTCATGAT
CCTGTCCTTCTACGTGGTCGTCGCCGGCTGGTCGCTTGCCTACCTGTGGAAGGCGATCAGCGGCGGCCTGCAGGGTGGCA
GCGTCGAGGACATGGCGGCCATCTTCGGCGCCAACAACGCCAATCCGCTGACGCTGGGGGCGTGGAGCACGCTGGTGACG
GTGGTGACCATGTTCATCGTCGGCAAGGGGGTGCAGGAAGGCATCGAGCGCAGCATGCGCTGGATGATGCCGGGCATGGT
GCTGTTGCTGTTGGCCATGATCGTCTATGCCATGTTCTCCGGCGGCTTCGGCGAGGCGGTGACGTTCCTGTTCTCCTTCG
AGGTGGGCAAGCTGTCCAGCGCTGGCCTGCTGGCGGCGATGGGGCATGCCTTCTTCACGCTGTCGCTGTCGGCGGGGGCG
ATCATGGCCTACGGGGCCTACCTGCCCGACAGCAAGTCCATCGCGCGCACCACCTTCACCGTGGCGATCTGCGATACGCT
GATCGCGCTGATGGCCGGTCTGGCGATCTTTCCGGCGATTTTCGCCAACGGCATGGATCCGGCCAGCGGGCCGGGGCTGA
TCTTCATGAGTCTGCCGCTGGCCTTCCAGCAGATGCCGCTGGGCAATGTGCTGCAGGTGATCTTCTTCGTGATGCTCAGC
GTGGCGGCCCTGACCTCCGCCGTGTCGATGATCGAGGCCACGGTGGCCTGGCTGACCGAGCGCAAGGGCATGAGTCGCAA
GCGTGCGGCATGGAGCAGTGGCATCGTGCTCTGGTTGCTGAGCACGCTGGCCATGCTGTCCTTCAACCTGGGTGCCGACT
GGACGCTCGCCGGGAAGACCGTCTTCGACTGGCTCGATTACCTGACCTCGCGCTGGATGATGCCGCTGGGCGGTCTGGGG
CTCTGCCTGATGGCCGGCTTCCTGCTGCGCGACGAGATCTTCCGCGACGAACTGCGGCTCTCCAGGCGCCAGCATGCCTT
GTGGCTGCTGATGGTCCGCTACGTCAGTCCTCTGGGCATCGTGCTGATCTTCATCGATGCGCTGGGAGTGATGAGCATCG
ATATCGGCAGCCAGTGGCCGTGGTTCCTCGCGGTGCTGGTGGCCATCACCGTGCTCGGTGAGATGCTGAGCCCGCGCGTC
AGGCGCCAGTTGGTTGGCTGA

Upstream 100 bases:

>100_bases
ACGCGGTTCGCGAAATGTCGATGGAAAACGGTAGAATCGCCCGGTGGCAAGTGCTCGCGCCGCGCTGCATGAACCACAAA
AATAACCCTTCAGGTGAACC

Downstream 100 bases:

>100_bases
ACGCGGCCCCACAGACAGGCACGACAGATGAAGAAGCCCGGCCAAGGCCGGGCTTCTGCGTGTCGAGAACTGACGCGCGC
CTCGTCAGGATCCGTCTTCG

Product: sodium:neurotransmitter symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MTARQQPKNLWIGRWGFVLAATGSAVGLGNIWKFPYMTGEYGGGAFVLVYLACILCIGIPAMMTEIAFGRRGRGSPIDAV
KRVAQESGRGKIWSGFGWMSMLAGFMILSFYVVVAGWSLAYLWKAISGGLQGGSVEDMAAIFGANNANPLTLGAWSTLVT
VVTMFIVGKGVQEGIERSMRWMMPGMVLLLLAMIVYAMFSGGFGEAVTFLFSFEVGKLSSAGLLAAMGHAFFTLSLSAGA
IMAYGAYLPDSKSIARTTFTVAICDTLIALMAGLAIFPAIFANGMDPASGPGLIFMSLPLAFQQMPLGNVLQVIFFVMLS
VAALTSAVSMIEATVAWLTERKGMSRKRAAWSSGIVLWLLSTLAMLSFNLGADWTLAGKTVFDWLDYLTSRWMMPLGGLG
LCLMAGFLLRDEIFRDELRLSRRQHALWLLMVRYVSPLGIVLIFIDALGVMSIDIGSQWPWFLAVLVAITVLGEMLSPRV
RRQLVG

Sequences:

>Translated_486_residues
MTARQQPKNLWIGRWGFVLAATGSAVGLGNIWKFPYMTGEYGGGAFVLVYLACILCIGIPAMMTEIAFGRRGRGSPIDAV
KRVAQESGRGKIWSGFGWMSMLAGFMILSFYVVVAGWSLAYLWKAISGGLQGGSVEDMAAIFGANNANPLTLGAWSTLVT
VVTMFIVGKGVQEGIERSMRWMMPGMVLLLLAMIVYAMFSGGFGEAVTFLFSFEVGKLSSAGLLAAMGHAFFTLSLSAGA
IMAYGAYLPDSKSIARTTFTVAICDTLIALMAGLAIFPAIFANGMDPASGPGLIFMSLPLAFQQMPLGNVLQVIFFVMLS
VAALTSAVSMIEATVAWLTERKGMSRKRAAWSSGIVLWLLSTLAMLSFNLGADWTLAGKTVFDWLDYLTSRWMMPLGGLG
LCLMAGFLLRDEIFRDELRLSRRQHALWLLMVRYVSPLGIVLIFIDALGVMSIDIGSQWPWFLAVLVAITVLGEMLSPRV
RRQLVG
>Mature_485_residues
TARQQPKNLWIGRWGFVLAATGSAVGLGNIWKFPYMTGEYGGGAFVLVYLACILCIGIPAMMTEIAFGRRGRGSPIDAVK
RVAQESGRGKIWSGFGWMSMLAGFMILSFYVVVAGWSLAYLWKAISGGLQGGSVEDMAAIFGANNANPLTLGAWSTLVTV
VTMFIVGKGVQEGIERSMRWMMPGMVLLLLAMIVYAMFSGGFGEAVTFLFSFEVGKLSSAGLLAAMGHAFFTLSLSAGAI
MAYGAYLPDSKSIARTTFTVAICDTLIALMAGLAIFPAIFANGMDPASGPGLIFMSLPLAFQQMPLGNVLQVIFFVMLSV
AALTSAVSMIEATVAWLTERKGMSRKRAAWSSGIVLWLLSTLAMLSFNLGADWTLAGKTVFDWLDYLTSRWMMPLGGLGL
CLMAGFLLRDEIFRDELRLSRRQHALWLLMVRYVSPLGIVLIFIDALGVMSIDIGSQWPWFLAVLVAITVLGEMLSPRVR
RQLVG

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI188528618, Length=495, Percent_Identity=22.8282828282828, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI7657587, Length=470, Percent_Identity=22.5531914893617, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI21361581, Length=461, Percent_Identity=22.1258134490239, Blast_Score=100, Evalue=6e-21,
Organism=Homo sapiens, GI4507043, Length=394, Percent_Identity=22.5888324873096, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI171184408, Length=447, Percent_Identity=22.3713646532438, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI171184406, Length=447, Percent_Identity=22.3713646532438, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI171184404, Length=447, Percent_Identity=22.3713646532438, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI4507041, Length=498, Percent_Identity=22.289156626506, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI51468073, Length=550, Percent_Identity=22.1818181818182, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI92859670, Length=417, Percent_Identity=23.7410071942446, Blast_Score=91, Evalue=4e-18,
Organism=Homo sapiens, GI289191351, Length=415, Percent_Identity=22.8915662650602, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI4557046, Length=415, Percent_Identity=22.8915662650602, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI289191377, Length=415, Percent_Identity=22.8915662650602, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI194018524, Length=306, Percent_Identity=25.8169934640523, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI58219014, Length=306, Percent_Identity=25.8169934640523, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI197276623, Length=399, Percent_Identity=22.8070175438596, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI54607094, Length=399, Percent_Identity=22.8070175438596, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI134304856, Length=400, Percent_Identity=24, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI33354281, Length=126, Percent_Identity=32.5396825396825, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI21361693, Length=126, Percent_Identity=32.5396825396825, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI5032097, Length=356, Percent_Identity=23.876404494382, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI12408638, Length=281, Percent_Identity=23.4875444839858, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI11181770, Length=300, Percent_Identity=21.6666666666667, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI218563756, Length=124, Percent_Identity=31.4516129032258, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI67782313, Length=373, Percent_Identity=22.7882037533512, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI67782317, Length=373, Percent_Identity=22.7882037533512, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI67782315, Length=373, Percent_Identity=22.7882037533512, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI6005715, Length=181, Percent_Identity=26.5193370165746, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI197276625, Length=123, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17554804, Length=465, Percent_Identity=26.6666666666667, Blast_Score=121, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17555248, Length=135, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17542050, Length=114, Percent_Identity=36.8421052631579, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71995588, Length=393, Percent_Identity=21.3740458015267, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI212642127, Length=105, Percent_Identity=32.3809523809524, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17535731, Length=125, Percent_Identity=32, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639514, Length=516, Percent_Identity=23.6434108527132, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI221329674, Length=516, Percent_Identity=23.6434108527132, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI17136952, Length=422, Percent_Identity=24.6445497630332, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI281364394, Length=422, Percent_Identity=24.6445497630332, Blast_Score=106, Evalue=5e-23,
Organism=Drosophila melanogaster, GI28574704, Length=422, Percent_Identity=24.6445497630332, Blast_Score=106, Evalue=5e-23,
Organism=Drosophila melanogaster, GI17136950, Length=422, Percent_Identity=24.6445497630332, Blast_Score=106, Evalue=5e-23,
Organism=Drosophila melanogaster, GI28574702, Length=422, Percent_Identity=24.6445497630332, Blast_Score=106, Evalue=5e-23,
Organism=Drosophila melanogaster, GI45550877, Length=408, Percent_Identity=22.3039215686275, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI45551183, Length=459, Percent_Identity=22.0043572984749, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI281364136, Length=518, Percent_Identity=21.6216216216216, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24639516, Length=536, Percent_Identity=22.3880597014925, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24762620, Length=396, Percent_Identity=22.4747474747475, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI19921936, Length=396, Percent_Identity=25.5050505050505, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24655079, Length=302, Percent_Identity=24.5033112582781, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI45551088, Length=380, Percent_Identity=24.7368421052632, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24652942, Length=380, Percent_Identity=24.7368421052632, Blast_Score=82, Evalue=9e-16,
Organism=Drosophila melanogaster, GI281363702, Length=432, Percent_Identity=23.6111111111111, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24654186, Length=146, Percent_Identity=28.7671232876712, Blast_Score=73, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 52628; Mature: 52497

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARQQPKNLWIGRWGFVLAATGSAVGLGNIWKFPYMTGEYGGGAFVLVYLACILCIGIP
CCCCCCCCCCEEECHHHHEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHH
AMMTEIAFGRRGRGSPIDAVKRVAQESGRGKIWSGFGWMSMLAGFMILSFYVVVAGWSLA
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHH
YLWKAISGGLQGGSVEDMAAIFGANNANPLTLGAWSTLVTVVTMFIVGKGVQEGIERSMR
HHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHH
WMMPGMVLLLLAMIVYAMFSGGFGEAVTFLFSFEVGKLSSAGLLAAMGHAFFTLSLSAGA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCH
IMAYGAYLPDSKSIARTTFTVAICDTLIALMAGLAIFPAIFANGMDPASGPGLIFMSLPL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCH
AFQQMPLGNVLQVIFFVMLSVAALTSAVSMIEATVAWLTERKGMSRKRAAWSSGIVLWLL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHH
STLAMLSFNLGADWTLAGKTVFDWLDYLTSRWMMPLGGLGLCLMAGFLLRDEIFRDELRL
HHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SRRQHALWLLMVRYVSPLGIVLIFIDALGVMSIDIGSQWPWFLAVLVAITVLGEMLSPRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCHHH
RRQLVG
HHHHCC
>Mature Secondary Structure 
TARQQPKNLWIGRWGFVLAATGSAVGLGNIWKFPYMTGEYGGGAFVLVYLACILCIGIP
CCCCCCCCCEEECHHHHEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHH
AMMTEIAFGRRGRGSPIDAVKRVAQESGRGKIWSGFGWMSMLAGFMILSFYVVVAGWSLA
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHH
YLWKAISGGLQGGSVEDMAAIFGANNANPLTLGAWSTLVTVVTMFIVGKGVQEGIERSMR
HHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHH
WMMPGMVLLLLAMIVYAMFSGGFGEAVTFLFSFEVGKLSSAGLLAAMGHAFFTLSLSAGA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCH
IMAYGAYLPDSKSIARTTFTVAICDTLIALMAGLAIFPAIFANGMDPASGPGLIFMSLPL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCH
AFQQMPLGNVLQVIFFVMLSVAALTSAVSMIEATVAWLTERKGMSRKRAAWSSGIVLWLL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHH
STLAMLSFNLGADWTLAGKTVFDWLDYLTSRWMMPLGGLGLCLMAGFLLRDEIFRDELRL
HHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SRRQHALWLLMVRYVSPLGIVLIFIDALGVMSIDIGSQWPWFLAVLVAITVLGEMLSPRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCHHH
RRQLVG
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]