Click here to switch to the map view.

The map label for this gene is hspC2 [H]

Identifier: 92113554

GI number: 92113554

Start: 1617085

End: 1617594

Strand: Direct

Name: hspC2 [H]

Synonym: Csal_1429

Alternate gene names: 92113554

Gene position: 1617085-1617594 (Clockwise)

Preceding gene: 92113551

Following gene: 92113560

Centisome position: 43.74

GC content: 57.06

Gene sequence:

>510_bases
ATGTCCGATAAAAAGTTCAAGGAAGCCGCAACGAGTGTTCAGAGTACGCCGGCCGTCTCCGACGATCAGGTCGTCAGGTC
TCGCGCCATGAGTCCGTTCGGCGAGCTGGATCGCATGTTCGATAGCCTGTTTGCCCGGGACTGGATGCTTCCCCACCGTT
GGGAGCGTCTGACGGGACTGAAATCGACCATGCCCAGGGTCGATATACTCGACAAGGACGCGGAAGTGATATTGCGGGCG
GAAATACCCGGGATCGAGCCGCAGGACGTCGATGTGTCGGTCACCGACAGGACGGTGACGATCAAGGGAGAAAGCCACCG
GGAAAGCCGCAAGGAAGAAGGCGATTACTATCGCTGTGAAATATCGCAAGGCAGCGTGATGCGTACGGTGGATCTGCCCT
GTGACATCGATGCCGACAAGGCCGAAGCCACTTTCAAGAATGGCATTCTCGAGGTGACCTTGCCCAAGCTCAAGGAAGCC
CACCGCAGAAAGCTGCATATCAAGGCTTGA

Upstream 100 bases:

>100_bases
AAATTCTTATATTTTGCGGATGGACTATTTTTTTACAGCGCCAAGGGGCGCGTTTGTTGGGACACATTCCACGGCTGGTT
GACAGCAAGAGAGGTATGTC

Downstream 100 bases:

>100_bases
GGCGTTCGCACGGCAAGGCAATGCCTTGCCGCGCTTTCATGGGGCCATCAGTCGCTTGCCGATTCGCGATGGCGGCAGGG
CGACCTCAGCGGTCGGCGCA

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSDKKFKEAATSVQSTPAVSDDQVVRSRAMSPFGELDRMFDSLFARDWMLPHRWERLTGLKSTMPRVDILDKDAEVILRA
EIPGIEPQDVDVSVTDRTVTIKGESHRESRKEEGDYYRCEISQGSVMRTVDLPCDIDADKAEATFKNGILEVTLPKLKEA
HRRKLHIKA

Sequences:

>Translated_169_residues
MSDKKFKEAATSVQSTPAVSDDQVVRSRAMSPFGELDRMFDSLFARDWMLPHRWERLTGLKSTMPRVDILDKDAEVILRA
EIPGIEPQDVDVSVTDRTVTIKGESHRESRKEEGDYYRCEISQGSVMRTVDLPCDIDADKAEATFKNGILEVTLPKLKEA
HRRKLHIKA
>Mature_168_residues
SDKKFKEAATSVQSTPAVSDDQVVRSRAMSPFGELDRMFDSLFARDWMLPHRWERLTGLKSTMPRVDILDKDAEVILRAE
IPGIEPQDVDVSVTDRTVTIKGESHRESRKEEGDYYRCEISQGSVMRTVDLPCDIDADKAEATFKNGILEVTLPKLKEAH
RRKLHIKA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 19232; Mature: 19101

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKKFKEAATSVQSTPAVSDDQVVRSRAMSPFGELDRMFDSLFARDWMLPHRWERLTGL
CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
KSTMPRVDILDKDAEVILRAEIPGIEPQDVDVSVTDRTVTIKGESHRESRKEEGDYYRCE
HHCCCCCEEECCCCEEEEEECCCCCCCCCCEEEECCEEEEEECCCHHHHHHCCCCEEEEE
ISQGSVMRTVDLPCDIDADKAEATFKNGILEVTLPKLKEAHRRKLHIKA
ECCCCEEEEECCCCCCCCCCHHHHHHCCEEEEECHHHHHHHHHEEECCC
>Mature Secondary Structure 
SDKKFKEAATSVQSTPAVSDDQVVRSRAMSPFGELDRMFDSLFARDWMLPHRWERLTGL
CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
KSTMPRVDILDKDAEVILRAEIPGIEPQDVDVSVTDRTVTIKGESHRESRKEEGDYYRCE
HHCCCCCEEECCCCEEEEEECCCCCCCCCCEEEECCEEEEEECCCHHHHHHCCCCEEEEE
ISQGSVMRTVDLPCDIDADKAEATFKNGILEVTLPKLKEAHRRKLHIKA
ECCCCEEEEECCCCCCCCCCHHHHHHCCEEEEECHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA