Click here to switch to the map view.

The map label for this gene is orn [H]

Identifier: 92113396

GI number: 92113396

Start: 1449105

End: 1449668

Strand: Direct

Name: orn [H]

Synonym: Csal_1270

Alternate gene names: 92113396

Gene position: 1449105-1449668 (Clockwise)

Preceding gene: 92113394

Following gene: 92113398

Centisome position: 39.2

GC content: 62.59

Gene sequence:

>564_bases
ATGGCGAGCGAACAGCCGCAAGCCCCGCGCAGCGACCTGCTGGTGTGGATCGATCTGGAAATGACCGGCCTCGACCCTCA
GCGCGAGCGCATCATCGAGGTGGCCACGCTGATCACCGACAACGATCTGAATCTGGTGGCCGAAGGGCCGGTGTTGGCGG
TGCATCAGCCGGATGCCCTGCTGGCGGGCATGGACGAGTGGAATACCCGTACGCACGGTGATTCGGGGCTCACGCAGCGT
GTCCGCGAGAGTCGCATCGATACCGCCGAGGCCGAGCGCCAGACCCTGGCGTTCCTCAAGCGCTATGTCACGCCGAACAG
CTCACCGATGTGCGGCAACAGCGTGCACCAGGATCGCCGTTTTCTGGTACGCGAGATGCCCGAGCTGGCCGATTTCTTCC
ATTACCGCAATCTCGACGTGTCGACGCTCAAGGAACTGGCCAAGCGCTGGAATCCTCAGGCGCTGGAAGGCTTCGAGAAG
CGCAATACGCACCAGGCCATGGACGACATTCGCGAGTCGCTGGCCGAATTGGCGCATTATCGTCAGACGTTCTTGCGGGT
CTAG

Upstream 100 bases:

>100_bases
GTTTGCTCATGCGCTCTCGGGACAGGGTACAATGGCCGCCATTGTAGCCTTCATCGCGCCACGCTGTCCCTAGGCGTGGC
GCCTCGGACGGGAGAACGAC

Downstream 100 bases:

>100_bases
GCGCTGCGTTCGGGCGCTGCCGGGGCATCGACGTCGCTGGCGATGCGCCGCTCGCGCTTGCGGCGTTGCTGTTCGAGTCC
CCAGCGCACGTGCTCCCGGA

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MASEQPQAPRSDLLVWIDLEMTGLDPQRERIIEVATLITDNDLNLVAEGPVLAVHQPDALLAGMDEWNTRTHGDSGLTQR
VRESRIDTAEAERQTLAFLKRYVTPNSSPMCGNSVHQDRRFLVREMPELADFFHYRNLDVSTLKELAKRWNPQALEGFEK
RNTHQAMDDIRESLAELAHYRQTFLRV

Sequences:

>Translated_187_residues
MASEQPQAPRSDLLVWIDLEMTGLDPQRERIIEVATLITDNDLNLVAEGPVLAVHQPDALLAGMDEWNTRTHGDSGLTQR
VRESRIDTAEAERQTLAFLKRYVTPNSSPMCGNSVHQDRRFLVREMPELADFFHYRNLDVSTLKELAKRWNPQALEGFEK
RNTHQAMDDIRESLAELAHYRQTFLRV
>Mature_186_residues
ASEQPQAPRSDLLVWIDLEMTGLDPQRERIIEVATLITDNDLNLVAEGPVLAVHQPDALLAGMDEWNTRTHGDSGLTQRV
RESRIDTAEAERQTLAFLKRYVTPNSSPMCGNSVHQDRRFLVREMPELADFFHYRNLDVSTLKELAKRWNPQALEGFEKR
NTHQAMDDIRESLAELAHYRQTFLRV

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=186, Percent_Identity=47.8494623655914, Blast_Score=184, Evalue=3e-47,
Organism=Escherichia coli, GI87082382, Length=174, Percent_Identity=64.367816091954, Blast_Score=245, Evalue=1e-66,
Organism=Caenorhabditis elegans, GI17557752, Length=172, Percent_Identity=43.0232558139535, Blast_Score=168, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6323088, Length=183, Percent_Identity=41.5300546448087, Blast_Score=131, Evalue=5e-32,
Organism=Drosophila melanogaster, GI21355135, Length=174, Percent_Identity=44.2528735632184, Blast_Score=175, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 21525; Mature: 21393

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASEQPQAPRSDLLVWIDLEMTGLDPQRERIIEVATLITDNDLNLVAEGPVLAVHQPDAL
CCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCHH
LAGMDEWNTRTHGDSGLTQRVRESRIDTAEAERQTLAFLKRYVTPNSSPMCGNSVHQDRR
HHCCHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
FLVREMPELADFFHYRNLDVSTLKELAKRWNPQALEGFEKRNTHQAMDDIRESLAELAHY
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RQTFLRV
HHHHHCC
>Mature Secondary Structure 
ASEQPQAPRSDLLVWIDLEMTGLDPQRERIIEVATLITDNDLNLVAEGPVLAVHQPDAL
CCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCHH
LAGMDEWNTRTHGDSGLTQRVRESRIDTAEAERQTLAFLKRYVTPNSSPMCGNSVHQDRR
HHCCHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
FLVREMPELADFFHYRNLDVSTLKELAKRWNPQALEGFEKRNTHQAMDDIRESLAELAHY
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RQTFLRV
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA