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The map label for this gene is araH [H]

Identifier: 92113149

GI number: 92113149

Start: 1152325

End: 1153326

Strand: Direct

Name: araH [H]

Synonym: Csal_1021

Alternate gene names: 92113149

Gene position: 1152325-1153326 (Clockwise)

Preceding gene: 92113148

Following gene: 92113150

Centisome position: 31.17

GC content: 66.07

Gene sequence:

>1002_bases
ATGAGCACAGATAAACTGGCTGCCAGCGACAACACGTCATCGGCACCGAAACCCCGTGCCAAACCGCTACGCACCCTGCT
CGACACCTCCGGCCTGATCGCCATATTCCTGGTGCTGTTCGTGGCCCTGGCGCTGTTCGTGCCGGACTTCCTGACCGGGC
GAAATATCGTCGGGTTGCTGCTCTCGGTGACCTTGATCGGCACCATCGCCACGACCATGATGATGGTCCTCGCGCTCGGT
GAGGTGGATCTTTCGGTGGCCTCGATCGTGGCCTTCACCGGGGTCGTGGCAGCGGTCGTGACCTCGGCCACCGGCAGCGT
GTTCGTCGGCGTGCTGGGGGGCGTGGCCGCCGGCGGTGCGGTGGGGGCGTTCAATGGCTTCGTGGTGGCCAAGTTCGGCA
TCAACTCGTTGATCGCCACCCTGGCGGCGATGGAGTTCGTGCGCGGCCTGGCGTACATCACCTCCGGCGGCGACGCGGTG
ATGGTGACCGTGCCGAGCTTCTTCAGTCTGGGGAGCGCTTCTTTCCTGGGGCTGACCCTGCCGGTGTGGACGATGATCGT
GTGCTTCGTGATCTTCGGCATCGTGCTCAACATGACGGCCTTCGGTCGCAACACCCTGGCCACCGGGGGCAACGCCGAAG
CGGCGAGCCTGGCGGGGGTCAACGTGCGTCGCCTGAAAATCGCGGTGTTCGCGCTGCAGGGCGTCGTCGCCGGGGTCGCC
GGGGTGTTGCTGGCCTCGCGCATGGGCCTGGGCGATCCCAATACCTCCATGGGGCTGGAGCTCGCGGTGATCTCCGCCTG
CGTGCTGGGCGGCGTGTCGCTTTCCGGCGGGGTCGCCTCGATCACCGGCGTGCTGGTCGGCGTGCTGATCATGGGCTGCG
TGCAGAACGCCATGGGGCTGCTCAACGTACCGACCTTCTATCAGTACCTGGTACGCGGGGCGATCCTGCTGCTGGCGGTG
ATGTTCGATCGCTGGAAGCAAACCCGGCGCGCCAAGGGATGA

Upstream 100 bases:

>100_bases
GACATCGTACCGCGCGAGCAGGCAACCCAGGCGCGTCTGCTCGGTCTGGCCTTGCCCGCATGAGCCGCTCATTCATGACA
ATACCAAGAGATGGATCGCC

Downstream 100 bases:

>100_bases
CGATGCCGGAAAGGGCACCGCGTCTGCGCGGCAAGCATGTCTTCATCACCGGGGCCGCGGCCGGCATCGGCCGGGCCATG
GCCGAGGCCTGCGTTCAGGA

Product: L-arabinose transporter permease

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSTDKLAASDNTSSAPKPRAKPLRTLLDTSGLIAIFLVLFVALALFVPDFLTGRNIVGLLLSVTLIGTIATTMMMVLALG
EVDLSVASIVAFTGVVAAVVTSATGSVFVGVLGGVAAGGAVGAFNGFVVAKFGINSLIATLAAMEFVRGLAYITSGGDAV
MVTVPSFFSLGSASFLGLTLPVWTMIVCFVIFGIVLNMTAFGRNTLATGGNAEAASLAGVNVRRLKIAVFALQGVVAGVA
GVLLASRMGLGDPNTSMGLELAVISACVLGGVSLSGGVASITGVLVGVLIMGCVQNAMGLLNVPTFYQYLVRGAILLLAV
MFDRWKQTRRAKG

Sequences:

>Translated_333_residues
MSTDKLAASDNTSSAPKPRAKPLRTLLDTSGLIAIFLVLFVALALFVPDFLTGRNIVGLLLSVTLIGTIATTMMMVLALG
EVDLSVASIVAFTGVVAAVVTSATGSVFVGVLGGVAAGGAVGAFNGFVVAKFGINSLIATLAAMEFVRGLAYITSGGDAV
MVTVPSFFSLGSASFLGLTLPVWTMIVCFVIFGIVLNMTAFGRNTLATGGNAEAASLAGVNVRRLKIAVFALQGVVAGVA
GVLLASRMGLGDPNTSMGLELAVISACVLGGVSLSGGVASITGVLVGVLIMGCVQNAMGLLNVPTFYQYLVRGAILLLAV
MFDRWKQTRRAKG
>Mature_332_residues
STDKLAASDNTSSAPKPRAKPLRTLLDTSGLIAIFLVLFVALALFVPDFLTGRNIVGLLLSVTLIGTIATTMMMVLALGE
VDLSVASIVAFTGVVAAVVTSATGSVFVGVLGGVAAGGAVGAFNGFVVAKFGINSLIATLAAMEFVRGLAYITSGGDAVM
VTVPSFFSLGSASFLGLTLPVWTMIVCFVIFGIVLNMTAFGRNTLATGGNAEAASLAGVNVRRLKIAVFALQGVVAGVAG
VLLASRMGLGDPNTSMGLELAVISACVLGGVSLSGGVASITGVLVGVLIMGCVQNAMGLLNVPTFYQYLVRGAILLLAVM
FDRWKQTRRAKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=322, Percent_Identity=53.416149068323, Blast_Score=309, Evalue=2e-85,
Organism=Escherichia coli, GI1788896, Length=328, Percent_Identity=33.8414634146341, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1790191, Length=308, Percent_Identity=36.3636363636364, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1789992, Length=373, Percent_Identity=31.6353887399464, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1790524, Length=318, Percent_Identity=32.3899371069182, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI87082395, Length=300, Percent_Identity=30.6666666666667, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787793, Length=249, Percent_Identity=31.7269076305221, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI145693214, Length=224, Percent_Identity=34.8214285714286, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=30.8383233532934, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787794, Length=261, Percent_Identity=27.2030651340996, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33846; Mature: 33715

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDKLAASDNTSSAPKPRAKPLRTLLDTSGLIAIFLVLFVALALFVPDFLTGRNIVGLL
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LSVTLIGTIATTMMMVLALGEVDLSVASIVAFTGVVAAVVTSATGSVFVGVLGGVAAGGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
VGAFNGFVVAKFGINSLIATLAAMEFVRGLAYITSGGDAVMVTVPSFFSLGSASFLGLTL
HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCHHHHHHH
PVWTMIVCFVIFGIVLNMTAFGRNTLATGGNAEAASLAGVNVRRLKIAVFALQGVVAGVA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
GVLLASRMGLGDPNTSMGLELAVISACVLGGVSLSGGVASITGVLVGVLIMGCVQNAMGL
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LNVPTFYQYLVRGAILLLAVMFDRWKQTRRAKG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STDKLAASDNTSSAPKPRAKPLRTLLDTSGLIAIFLVLFVALALFVPDFLTGRNIVGLL
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]