Click here to switch to the map view.

The map label for this gene is yafC [H]

Identifier: 92112952

GI number: 92112952

Start: 919126

End: 920055

Strand: Direct

Name: yafC [H]

Synonym: Csal_0824

Alternate gene names: 92112952

Gene position: 919126-920055 (Clockwise)

Preceding gene: 92112949

Following gene: 92112960

Centisome position: 24.86

GC content: 65.7

Gene sequence:

>930_bases
ATGAGCAACTCGATCTCACTGGTGGCGCTGCGTTTGTTCGTACGCGTCGCGGCCACGGGAAGCTTTGCGGGGGCGGCGCG
TCAGCAGGGGCTGCCGGCCTCGTCGGTGTCGCGCCATATCGCGGCGCTGGAAAAGGCGCTGGGTCAGCGGCTGCTCTATC
GGCACACGCGTGCGGTGCGGCTGACGGAAGTGGGGGAGCGGTATTACCAGCAGGTGCGCGAGATTCTGGATACGCTGGAT
ATCGCGACCGAGCAGGCGGCGGGCACGGCATCACAGCCCCAGGGGCTGTTGCGCATCAACGCGCCGGTGGCATTCGGCCG
GCGGCATATCGCGCCACGCCTGGCGAGTTTCCAGGCCAGGTATCCGCGAATCGAGACGGAGCTGACGCTCAGCGATGCCT
TCATCGACCCGGTGCAGGATGGAGTCGATGTCGTGGTGCGGGTGGGGGCCCTGAACGATTCCAGCCTGGTGGCACGTCGA
CTGGCCGAGCAGCACTTCGTGGTGTGCGCCGCGCCGGATTATCTGGCGCAATGGGGAATACCTGCCACACCCGAGTCGCT
GGTGGAGCACAACTGCCTGATCTACAAGGGGACGCGAGGCGTCCAGCAATGGTATTTCCGGTCCGAGGGCGCTCGCCGGT
ATCAGGTGCGCGAAGTGCGCGGCAACTTGCGCAGCAACAACGCCGAGAGCCTGCTGGAAGCCGCCTTGCAGGGCCAGGGC
ATCGTGCTGTTCCCGACATGGCTGATCCACGCCGAGCTCGAGGCCGGGCGGCTGATACCCGTGCTGTCCGATTGGGAAGC
ATCCGGCGAGCCTGCCCCGCAAGGCATTCATGCGATCTTTCCGGAAAACCGCTTGCGCTCTTCCAAGGTGGCGGCGTTCC
TGGAGGACCTGCAAGCGACGATCGGCGAGCCGCCGTATTGGGATGCTTGA

Upstream 100 bases:

>100_bases
TGACGATGGTTTTCATGAGGAACCTCCGCAAAAGGAAGGCGACGATAGCGCCTTGCTCTTAGCGCTACAATGCGATGGTT
TGGCATAGGTGAATTGCATT

Downstream 100 bases:

>100_bases
TGTCCGTGGTCTGCCTCGCAGGGAAGGCGGTATCTCTGGTCCGCAGACTTGCGCCACGCTGTCGGGCGTTCAGCCGGAGC
CGCTGCCAGACAGTGTGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MSNSISLVALRLFVRVAATGSFAGAARQQGLPASSVSRHIAALEKALGQRLLYRHTRAVRLTEVGERYYQQVREILDTLD
IATEQAAGTASQPQGLLRINAPVAFGRRHIAPRLASFQARYPRIETELTLSDAFIDPVQDGVDVVVRVGALNDSSLVARR
LAEQHFVVCAAPDYLAQWGIPATPESLVEHNCLIYKGTRGVQQWYFRSEGARRYQVREVRGNLRSNNAESLLEAALQGQG
IVLFPTWLIHAELEAGRLIPVLSDWEASGEPAPQGIHAIFPENRLRSSKVAAFLEDLQATIGEPPYWDA

Sequences:

>Translated_309_residues
MSNSISLVALRLFVRVAATGSFAGAARQQGLPASSVSRHIAALEKALGQRLLYRHTRAVRLTEVGERYYQQVREILDTLD
IATEQAAGTASQPQGLLRINAPVAFGRRHIAPRLASFQARYPRIETELTLSDAFIDPVQDGVDVVVRVGALNDSSLVARR
LAEQHFVVCAAPDYLAQWGIPATPESLVEHNCLIYKGTRGVQQWYFRSEGARRYQVREVRGNLRSNNAESLLEAALQGQG
IVLFPTWLIHAELEAGRLIPVLSDWEASGEPAPQGIHAIFPENRLRSSKVAAFLEDLQATIGEPPYWDA
>Mature_308_residues
SNSISLVALRLFVRVAATGSFAGAARQQGLPASSVSRHIAALEKALGQRLLYRHTRAVRLTEVGERYYQQVREILDTLDI
ATEQAAGTASQPQGLLRINAPVAFGRRHIAPRLASFQARYPRIETELTLSDAFIDPVQDGVDVVVRVGALNDSSLVARRL
AEQHFVVCAAPDYLAQWGIPATPESLVEHNCLIYKGTRGVQQWYFRSEGARRYQVREVRGNLRSNNAESLLEAALQGQGI
VLFPTWLIHAELEAGRLIPVLSDWEASGEPAPQGIHAIFPENRLRSSKVAAFLEDLQATIGEPPYWDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=35.016835016835, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=36.3333333333333, Blast_Score=174, Evalue=9e-45,
Organism=Escherichia coli, GI1789440, Length=309, Percent_Identity=32.6860841423948, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI87081978, Length=307, Percent_Identity=33.5504885993485, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789639, Length=288, Percent_Identity=32.6388888888889, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=32.280701754386, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=27.4914089347079, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789173, Length=287, Percent_Identity=30.6620209059233, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790011, Length=260, Percent_Identity=24.6153846153846, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1788706, Length=272, Percent_Identity=23.8970588235294, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786448, Length=287, Percent_Identity=25.0871080139373, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=181, Percent_Identity=24.8618784530387, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082132, Length=262, Percent_Identity=27.0992366412214, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787806, Length=264, Percent_Identity=24.6212121212121, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34084; Mature: 33953

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSISLVALRLFVRVAATGSFAGAARQQGLPASSVSRHIAALEKALGQRLLYRHTRAVR
CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTEVGERYYQQVREILDTLDIATEQAAGTASQPQGLLRINAPVAFGRRHIAPRLASFQAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
YPRIETELTLSDAFIDPVQDGVDVVVRVGALNDSSLVARRLAEQHFVVCAAPDYLAQWGI
CCCCCEEEEHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCEEEEECHHHHHHCCC
PATPESLVEHNCLIYKGTRGVQQWYFRSEGARRYQVREVRGNLRSNNAESLLEAALQGQG
CCCHHHHHHCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
IVLFPTWLIHAELEAGRLIPVLSDWEASGEPAPQGIHAIFPENRLRSSKVAAFLEDLQAT
EEEEEHEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHH
IGEPPYWDA
HCCCCCCCC
>Mature Secondary Structure 
SNSISLVALRLFVRVAATGSFAGAARQQGLPASSVSRHIAALEKALGQRLLYRHTRAVR
CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTEVGERYYQQVREILDTLDIATEQAAGTASQPQGLLRINAPVAFGRRHIAPRLASFQAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
YPRIETELTLSDAFIDPVQDGVDVVVRVGALNDSSLVARRLAEQHFVVCAAPDYLAQWGI
CCCCCEEEEHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCEEEEECHHHHHHCCC
PATPESLVEHNCLIYKGTRGVQQWYFRSEGARRYQVREVRGNLRSNNAESLLEAALQGQG
CCCHHHHHHCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
IVLFPTWLIHAELEAGRLIPVLSDWEASGEPAPQGIHAIFPENRLRSSKVAAFLEDLQAT
EEEEEHEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHH
IGEPPYWDA
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]