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The map label for this gene is ymdB [C]

Identifier: 92112452

GI number: 92112452

Start: 358489

End: 359040

Strand: Direct

Name: ymdB [C]

Synonym: Csal_0319

Alternate gene names: 92112452

Gene position: 358489-359040 (Clockwise)

Preceding gene: 92112451

Following gene: 92112464

Centisome position: 9.7

GC content: 65.76

Gene sequence:

>552_bases
ATGTCCCTGACGCTATGGGCGGGGCGTGTCGACGTGGTGAGCGGCGACATTACCCGCCTCGATGTCGATGCCATCGTCAA
CGCGGCCAATCATTCCTTGATGGGCGGCGGTGGCGTGGATGGCGCCATCTACCGCGCGGCGGGACCCGCGCTCAAGCGGG
CCTGCCGCGCGCTGCGCGAGACGCACTGGCCCGATGGCCTGCCGGACGGCGAGGTCGCGCTGACCGAGGGATTCGAGCTG
CCGGCACGCTATGTCATTCACACCGTAGGCCCGGTCTACGCCAAGACGCGCGATAAATCCCACCTGCTGGCCAATTGCTA
TCGCAATGCCGTGGCGCTGGCGGCCGAGACGGGGTGCCGGCGCATTGCCTTCCCCGCGATTTCCACCGGCGTCTACGGTT
ACCCCTTCGACGATGCCGCTCACATCGTGATCGATACGCTGCATGACGCACTGGCGATCCATGATCTCCGGGTGACACTG
TGCTTCTTCAGCGAGCGCGATTACCAAGCGTTCGCGGAAATCGCCATGCGACGCGGCGTCGCCGACGCATGA

Upstream 100 bases:

>100_bases
ACTTGTCAATCTAATGTGCTCTTTGCATAGGAGGCTTAGAGCTTCCTTGTGCGTCGCGTTATCGATTAAAACCGAGGGTC
TTTATTAGGAGGAGAGGCTC

Downstream 100 bases:

>100_bases
TGCCGGGCGGGGGATGAGGCCGTCGCTCTACAGGAATTCGGCCAGTTCCTCGCCTCCCAGATTGCCACCGGTCACCACCA
CGACGACATCGCCATGCGAG

Product: Appr-1-p processing

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MSLTLWAGRVDVVSGDITRLDVDAIVNAANHSLMGGGGVDGAIYRAAGPALKRACRALRETHWPDGLPDGEVALTEGFEL
PARYVIHTVGPVYAKTRDKSHLLANCYRNAVALAAETGCRRIAFPAISTGVYGYPFDDAAHIVIDTLHDALAIHDLRVTL
CFFSERDYQAFAEIAMRRGVADA

Sequences:

>Translated_183_residues
MSLTLWAGRVDVVSGDITRLDVDAIVNAANHSLMGGGGVDGAIYRAAGPALKRACRALRETHWPDGLPDGEVALTEGFEL
PARYVIHTVGPVYAKTRDKSHLLANCYRNAVALAAETGCRRIAFPAISTGVYGYPFDDAAHIVIDTLHDALAIHDLRVTL
CFFSERDYQAFAEIAMRRGVADA
>Mature_182_residues
SLTLWAGRVDVVSGDITRLDVDAIVNAANHSLMGGGGVDGAIYRAAGPALKRACRALRETHWPDGLPDGEVALTEGFELP
ARYVIHTVGPVYAKTRDKSHLLANCYRNAVALAAETGCRRIAFPAISTGVYGYPFDDAAHIVIDTLHDALAIHDLRVTLC
FFSERDYQAFAEIAMRRGVADA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=168, Percent_Identity=48.2142857142857, Blast_Score=150, Evalue=4e-37,
Organism=Homo sapiens, GI13569840, Length=164, Percent_Identity=46.9512195121951, Blast_Score=142, Evalue=2e-34,
Organism=Homo sapiens, GI207450721, Length=183, Percent_Identity=35.5191256830601, Blast_Score=107, Evalue=7e-24,
Organism=Homo sapiens, GI8923143, Length=183, Percent_Identity=35.5191256830601, Blast_Score=107, Evalue=8e-24,
Organism=Homo sapiens, GI154813199, Length=171, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI20336746, Length=146, Percent_Identity=32.8767123287671, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI226371718, Length=141, Percent_Identity=29.0780141843972, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI226371716, Length=141, Percent_Identity=29.0780141843972, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI226371714, Length=141, Percent_Identity=29.0780141843972, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI226371712, Length=141, Percent_Identity=29.0780141843972, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI226371710, Length=141, Percent_Identity=29.0780141843972, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI226371706, Length=141, Percent_Identity=29.0780141843972, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1787283, Length=174, Percent_Identity=45.4022988505747, Blast_Score=140, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI17538214, Length=170, Percent_Identity=45.2941176470588, Blast_Score=123, Evalue=5e-29,
Organism=Drosophila melanogaster, GI24586353, Length=186, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19741; Mature: 19609

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTLWAGRVDVVSGDITRLDVDAIVNAANHSLMGGGGVDGAIYRAAGPALKRACRALRE
CCEEEECCEEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHH
THWPDGLPDGEVALTEGFELPARYVIHTVGPVYAKTRDKSHLLANCYRNAVALAAETGCR
CCCCCCCCCCCEEEECCCCCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
RIAFPAISTGVYGYPFDDAAHIVIDTLHDALAIHDLRVTLCFFSERDYQAFAEIAMRRGV
EEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHCCC
ADA
CCC
>Mature Secondary Structure 
SLTLWAGRVDVVSGDITRLDVDAIVNAANHSLMGGGGVDGAIYRAAGPALKRACRALRE
CEEEECCEEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHH
THWPDGLPDGEVALTEGFELPARYVIHTVGPVYAKTRDKSHLLANCYRNAVALAAETGCR
CCCCCCCCCCCEEEECCCCCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
RIAFPAISTGVYGYPFDDAAHIVIDTLHDALAIHDLRVTLCFFSERDYQAFAEIAMRRGV
EEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHCCC
ADA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]