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The map label for this gene is cph2 [H]

Identifier: 92112451

GI number: 92112451

Start: 356584

End: 358389

Strand: Direct

Name: cph2 [H]

Synonym: Csal_0318

Alternate gene names: 92112451

Gene position: 356584-358389 (Clockwise)

Preceding gene: 92112446

Following gene: 92112452

Centisome position: 9.65

GC content: 46.4

Gene sequence:

>1806_bases
ATGGTTGATGGAGGTCGTGTGAGCTCTAAGGGAATATTTACTTCGGAAGAAAAAGAAAAGTTAAAGGGTATGTATGAGTC
ACGGTTGTCCCGCCTGGGCCCGAGCCATGCGCTGGACTGCCTTACTCAACTTGCCTCTAGCGTCATTGGTGTGCCTACCA
GCTTGGTGACGTTACTGGGGCCTGACGTGCAATGGATAAAATCACGGTATAATTTTGGGTTGGATGTTACGCCTTTGGAA
TCGTCTTTCTGCCGGCGAACAGTTCAGCGTAAAGACCTGACCATTATAGAAGATGCGCTGGATGATGATGAGTTCAAATG
CAATGATCTCGTTAATTCAGCGCCGTATGTCAGGTTTTATGCGGGCGCGCCGCTTTTTGACTCGGAAGGTGCCGCTATTG
GTGGCGTATGTGTTATCGACTATGAGCCTAGGAAACTCTCCGACAAAGAAGCTGAGATGCTCAGGGCTTTTTCCGTGATT
GCTAGCAATCTTCTGGAGTCGAGCAATAATGTTGGGTTTGTTGATTCCGTGACATTCCTCCCTAACCAGCAAAGGCTTAT
GAGGGATTTAGACGCGCTTCATGCCCGTCAGGATGAAGATCATGTGCTTCCAAAAACAGTTATTGTTTTAGAAGTGGTGT
CCACTAGTGGTTATCATGAGCTTGCAAAGAGTTATGGGGTTGAGGCGGTTGAAGAGGTTTCAAAAAATATCGCGGATCTT
CTGAGAGTTTGTCTCTCGGAGCGTCATTTGCTTTATGCTGTAAGTCTTTCTCGTTTTTCCGTATTGGTGCCCCAGTCGGA
GAGGGGGGCGGTGATTGATATAGTGGCGGCACTCAACTTCCGTATTGGAGCGGGAGGAAATACGGCACTGCCTGTCAATC
TACAGGTTTGTGCCGGATATTATGATTTTGATCCATTGGCCATTGCGCCGAGGGATACTTTTAGGAGAGCTCTCAGTGCA
TTATATGAAGCGCTAGCCTATCGTGAGCCAGTTATGGCATACCAAGTCAACTTTGATAATGCACAGCAACGCAAAGTGAA
GTTGATCAACAGCTTGCCGGAAGCTTTGGAGGATAGGCAGCTGTATCTTATGGTACAGCCTAAGATTAATATGAGGAGTG
GTGAAGTAGTAGGGCTGGAAGCCTTATTGAGGTGGAGGCACCCTGAGTTTGGAGAGCTGTCTCCAATGGAGTTTGTCCCC
CTTGTTGCTCAGACATATATGGTTAATGACCTGACGCACTGGGTTGTTAGAGAGGCGCTTGGGATAATAAGTCGGTTTCA
TGAGAAAGGTTGTTATCTTACTATTTCCGTTAATGTGACAACGACAAATCTGTTTGATGATTCTTTTTTTAATTGTGTCG
AGTCAATGCTTGGTGAGTTTGGTGTCGACCCCAAGTATCTTGAAATTGAGTGTTTGGAAACAGAAGAGTTGTTAGAGGAT
TATCGAATAGCGAGCGTGTTGCAGGCCCTTCGTGATATAGGGGTTCGTATTGCCCTGGACGATTTTGGAAGTGGTTATAG
TAATCTTAATTACCTCCGCCGGATTCCGGTCGACGTGGTGAAGATTGATCGAAGTATCATTAAGGATATGGAGGTTGATG
CAGGGAGCCGTGCTATCGTTTTTAGGCTGGTTCAGATTTTGAAACACTTTGACTACGGCATCGTTGCTGAGGGGATAGAG
AATCAGGCCACAGCTGATCAGCTACTGCAGTTTGGTTGCGTGGTTGGGCAGGGTTACTATTTTTATCGTCCCATGATATG
GGAGAAAGCTCTGGAGTCTTTTGCTCAATGTTTGCCTTCTTCTTGA

Upstream 100 bases:

>100_bases
ATTATTTGGGAACATGTGATCAATCATCCGGCTCCCGGCAGCGAGGAATGACAAAGGCCATATGACATCATTAAATTTGG
CATAAGGCACTATACCTGAC

Downstream 100 bases:

>100_bases
CTTGTCAATCTAATGTGCTCTTTGCATAGGAGGCTTAGAGCTTCCTTGTGCGTCGCGTTATCGATTAAAACCGAGGGTCT
TTATTAGGAGGAGAGGCTCA

Product: GAF sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MVDGGRVSSKGIFTSEEKEKLKGMYESRLSRLGPSHALDCLTQLASSVIGVPTSLVTLLGPDVQWIKSRYNFGLDVTPLE
SSFCRRTVQRKDLTIIEDALDDDEFKCNDLVNSAPYVRFYAGAPLFDSEGAAIGGVCVIDYEPRKLSDKEAEMLRAFSVI
ASNLLESSNNVGFVDSVTFLPNQQRLMRDLDALHARQDEDHVLPKTVIVLEVVSTSGYHELAKSYGVEAVEEVSKNIADL
LRVCLSERHLLYAVSLSRFSVLVPQSERGAVIDIVAALNFRIGAGGNTALPVNLQVCAGYYDFDPLAIAPRDTFRRALSA
LYEALAYREPVMAYQVNFDNAQQRKVKLINSLPEALEDRQLYLMVQPKINMRSGEVVGLEALLRWRHPEFGELSPMEFVP
LVAQTYMVNDLTHWVVREALGIISRFHEKGCYLTISVNVTTTNLFDDSFFNCVESMLGEFGVDPKYLEIECLETEELLED
YRIASVLQALRDIGVRIALDDFGSGYSNLNYLRRIPVDVVKIDRSIIKDMEVDAGSRAIVFRLVQILKHFDYGIVAEGIE
NQATADQLLQFGCVVGQGYYFYRPMIWEKALESFAQCLPSS

Sequences:

>Translated_601_residues
MVDGGRVSSKGIFTSEEKEKLKGMYESRLSRLGPSHALDCLTQLASSVIGVPTSLVTLLGPDVQWIKSRYNFGLDVTPLE
SSFCRRTVQRKDLTIIEDALDDDEFKCNDLVNSAPYVRFYAGAPLFDSEGAAIGGVCVIDYEPRKLSDKEAEMLRAFSVI
ASNLLESSNNVGFVDSVTFLPNQQRLMRDLDALHARQDEDHVLPKTVIVLEVVSTSGYHELAKSYGVEAVEEVSKNIADL
LRVCLSERHLLYAVSLSRFSVLVPQSERGAVIDIVAALNFRIGAGGNTALPVNLQVCAGYYDFDPLAIAPRDTFRRALSA
LYEALAYREPVMAYQVNFDNAQQRKVKLINSLPEALEDRQLYLMVQPKINMRSGEVVGLEALLRWRHPEFGELSPMEFVP
LVAQTYMVNDLTHWVVREALGIISRFHEKGCYLTISVNVTTTNLFDDSFFNCVESMLGEFGVDPKYLEIECLETEELLED
YRIASVLQALRDIGVRIALDDFGSGYSNLNYLRRIPVDVVKIDRSIIKDMEVDAGSRAIVFRLVQILKHFDYGIVAEGIE
NQATADQLLQFGCVVGQGYYFYRPMIWEKALESFAQCLPSS
>Mature_601_residues
MVDGGRVSSKGIFTSEEKEKLKGMYESRLSRLGPSHALDCLTQLASSVIGVPTSLVTLLGPDVQWIKSRYNFGLDVTPLE
SSFCRRTVQRKDLTIIEDALDDDEFKCNDLVNSAPYVRFYAGAPLFDSEGAAIGGVCVIDYEPRKLSDKEAEMLRAFSVI
ASNLLESSNNVGFVDSVTFLPNQQRLMRDLDALHARQDEDHVLPKTVIVLEVVSTSGYHELAKSYGVEAVEEVSKNIADL
LRVCLSERHLLYAVSLSRFSVLVPQSERGAVIDIVAALNFRIGAGGNTALPVNLQVCAGYYDFDPLAIAPRDTFRRALSA
LYEALAYREPVMAYQVNFDNAQQRKVKLINSLPEALEDRQLYLMVQPKINMRSGEVVGLEALLRWRHPEFGELSPMEFVP
LVAQTYMVNDLTHWVVREALGIISRFHEKGCYLTISVNVTTTNLFDDSFFNCVESMLGEFGVDPKYLEIECLETEELLED
YRIASVLQALRDIGVRIALDDFGSGYSNLNYLRRIPVDVVKIDRSIIKDMEVDAGSRAIVFRLVQILKHFDYGIVAEGIE
NQATADQLLQFGCVVGQGYYFYRPMIWEKALESFAQCLPSS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=420, Percent_Identity=25.7142857142857, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI87081921, Length=250, Percent_Identity=31.2, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI226510982, Length=466, Percent_Identity=25.5364806866953, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI87081743, Length=249, Percent_Identity=29.718875502008, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1787055, Length=259, Percent_Identity=28.5714285714286, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=31.6666666666667, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1790496, Length=292, Percent_Identity=25.6849315068493, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1786507, Length=241, Percent_Identity=28.6307053941909, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87081980, Length=277, Percent_Identity=29.2418772563177, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=29.0322580645161, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=28.3333333333333, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082096, Length=484, Percent_Identity=24.1735537190083, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 67313; Mature: 67313

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDGGRVSSKGIFTSEEKEKLKGMYESRLSRLGPSHALDCLTQLASSVIGVPTSLVTLLG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHC
PDVQWIKSRYNFGLDVTPLESSFCRRTVQRKDLTIIEDALDDDEFKCNDLVNSAPYVRFY
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHCCCCCEEEE
AGAPLFDSEGAAIGGVCVIDYEPRKLSDKEAEMLRAFSVIASNLLESSNNVGFVDSVTFL
ECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
PNQQRLMRDLDALHARQDEDHVLPKTVIVLEVVSTSGYHELAKSYGVEAVEEVSKNIADL
CCHHHHHHHHHHHHCCCCCCCCCCHHEEEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHH
LRVCLSERHLLYAVSLSRFSVLVPQSERGAVIDIVAALNFRIGAGGNTALPVNLQVCAGY
HHHHHCCCCEEEEEEHHHEEEEECCCCCCCEEEEEEHHCEEEECCCCCEEEEEEEEEECE
YDFDPLAIAPRDTFRRALSALYEALAYREPVMAYQVNFDNAQQRKVKLINSLPEALEDRQ
ECCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCE
LYLMVQPKINMRSGEVVGLEALLRWRHPEFGELSPMEFVPLVAQTYMVNDLTHWVVREAL
EEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GIISRFHEKGCYLTISVNVTTTNLFDDSFFNCVESMLGEFGVDPKYLEIECLETEELLED
HHHHHHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH
YRIASVLQALRDIGVRIALDDFGSGYSNLNYLRRIPVDVVKIDRSIIKDMEVDAGSRAIV
HHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHH
FRLVQILKHFDYGIVAEGIENQATADQLLQFGCVVGQGYYFYRPMIWEKALESFAQCLPS
HHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCC
S
C
>Mature Secondary Structure
MVDGGRVSSKGIFTSEEKEKLKGMYESRLSRLGPSHALDCLTQLASSVIGVPTSLVTLLG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHC
PDVQWIKSRYNFGLDVTPLESSFCRRTVQRKDLTIIEDALDDDEFKCNDLVNSAPYVRFY
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHCCCCCEEEE
AGAPLFDSEGAAIGGVCVIDYEPRKLSDKEAEMLRAFSVIASNLLESSNNVGFVDSVTFL
ECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
PNQQRLMRDLDALHARQDEDHVLPKTVIVLEVVSTSGYHELAKSYGVEAVEEVSKNIADL
CCHHHHHHHHHHHHCCCCCCCCCCHHEEEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHH
LRVCLSERHLLYAVSLSRFSVLVPQSERGAVIDIVAALNFRIGAGGNTALPVNLQVCAGY
HHHHHCCCCEEEEEEHHHEEEEECCCCCCCEEEEEEHHCEEEECCCCCEEEEEEEEEECE
YDFDPLAIAPRDTFRRALSALYEALAYREPVMAYQVNFDNAQQRKVKLINSLPEALEDRQ
ECCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCE
LYLMVQPKINMRSGEVVGLEALLRWRHPEFGELSPMEFVPLVAQTYMVNDLTHWVVREAL
EEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GIISRFHEKGCYLTISVNVTTTNLFDDSFFNCVESMLGEFGVDPKYLEIECLETEELLED
HHHHHHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH
YRIASVLQALRDIGVRIALDDFGSGYSNLNYLRRIPVDVVKIDRSIIKDMEVDAGSRAIV
HHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHH
FRLVQILKHFDYGIVAEGIENQATADQLLQFGCVVGQGYYFYRPMIWEKALESFAQCLPS
HHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]