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The map label for this gene is ygcL [H]

Identifier: 92112362

GI number: 92112362

Start: 258294

End: 259988

Strand: Direct

Name: ygcL [H]

Synonym: Csal_0227

Alternate gene names: 92112362

Gene position: 258294-259988 (Clockwise)

Preceding gene: 92112361

Following gene: 92112363

Centisome position: 6.99

GC content: 61.3

Gene sequence:

>1695_bases
ATGCCCATGAACCTCCTGACTGATCCTTGGTTACCCTTCCGCAGATCAGACGGAAGTCTTCTCTATCGCCCCCCTTCGGC
CCTGGCCGATCCCGATATCCTCGACCTTGCCCTTCCCCGTGCCGATTTCCAGGGTGCCGCATGGCAGTTTCTGATCGCAC
TGCTGCAAACGGCGATGACGCCAAAGAACACTGATGCCTGGCTGGACCGCTATCAGACGCCACCCAGTGTCGAGGAATTT
GAAGCAGCATTGGCGCCATTTTCGAGGGCCTTCGAACTCGACGGCGAGGGCCCGCGCTTCATGCAGGATCTCGATCCGCT
CGAGGACGTCAAGGACGCCCCGGTTGCCGGACTGCTGATCGATTCTCCCGGCGCCAACGGCATCAAGAACAATACCGATT
TCTTCGTCAAACGCGGTCGAGTCGAAGCCGTATGCCCGGACTGCGCGGCGCTGGCGCTCTATACCATGCAGATAAACGCG
CCCGCCGGCGGTGCCGGCATCCGCGTTGGCCTGCGTGGCGGCGGGCCGCTGACCACGCTGATCCTGCCCGAAGACGAGAC
CAAATCGCTGTGGGAGCGCCTCTGGCCCAACGTCATGCCGGCCGATGCCGTGGGTCAGCCGGGGCAGACATGGCGCCCGC
CCACGGTCGACGACGCTGACCTGTTTTTCTGGATGAGCGACACTCGAGTCAGCGACAAGAAGGGCACCGAGGTTTTTCCC
GATCAGGTCCATCCCCTGCACGCCCTGTGGTCGATGCCGCGCCGCTACCGTTTGCTGTTCGAGGATGAGTCGGGTTGTTG
CGATCTCTGTGGTCGCGAGTGTTCGCGACTAGTGCGTCGGCTGCGTTCGAAAAAGCAGGGTGCCAACTACGATGGCCCCT
GGCGTCATCCACTGACCCCGTATCGCCGTCTCAATCCCAAGAAAACCGACGAGTTACCACTTTCCAGCAAGGGGCAGCCC
GGCGGACTGGGCTACCGCCACTGGCCGGGACTGGTGCTGGAAGACGAGGCGAGCAGTGGCGCGATGCCAGCGAGAGTCGT
GACGCATCATCTGCACAAATATCGCATGGTCGAATCCGCGCGCGATGACGGCGAGGCGTTCGACGCGATGTTTCGGCACG
CCCGGCTATGGGTGTTCGGCTACGACATGGACAACATGAAACCTCGTGGCTGGTACAGCGTTGAAATGCCGCTGGTGGGT
GTCCCCGAAGCGCATCAGGAGATATTGCGCGATTGGGTCAAGCGCTTCGTCGACCTGGCCAGCGATGTTGCCTGGCAGGT
GCGTAATCAGCTCAAACGGGCCTGGTTCAAACGTCCCGAGGATGCCAAGGGCGATATGAGCCAGATCGATGCCCAGTTTT
TCGAGGCGACCCAGCTCGCGTTCTTCGATGTACTACGCCAGATGAGCGAGACGCTACGCGACTATGGGGATACACCGGCG
CTATCCCCGGAGATCCACCAAAAGTGGCATCTGACGCTCAAGCGGGAGGCGCTGAGACTCTTCGATGCCCAGGCCATCAG
CGGACCATTGGAAGGCATGAAGATGCAGCAGCTCGAGCGGATCACGAGCGCGCGGCGCTATTTGCTGGCCTATCTGAACG
GTAGCGGCAAAAAGGTTCAGGTATTTGCCCAGGTCGGCGGGTTCGAATTGAAGGCGCCGCAGTCCGAAGGCAATCGGAAG
GGGAACGCAGCATGA

Upstream 100 bases:

>100_bases
GATAAAAACGAAATCCATTTGTAGGAGAAAAGCCATTGTAACAAACTGGTTCTTTATGAAAGCTAGTGTGAATGTGTCCT
GTCAGCCGCAATAGTCTGGA

Downstream 100 bases:

>100_bases
GTGAGATCGAACAGGATGCGGTATCCGAAGACGCGAGCGAGGCCGGGAAGAGCGCAGTGGAAAGTCATCTGTATGCGCTG
GATAACAATGAGGCCTTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 564; Mature: 563

Protein sequence:

>564_residues
MPMNLLTDPWLPFRRSDGSLLYRPPSALADPDILDLALPRADFQGAAWQFLIALLQTAMTPKNTDAWLDRYQTPPSVEEF
EAALAPFSRAFELDGEGPRFMQDLDPLEDVKDAPVAGLLIDSPGANGIKNNTDFFVKRGRVEAVCPDCAALALYTMQINA
PAGGAGIRVGLRGGGPLTTLILPEDETKSLWERLWPNVMPADAVGQPGQTWRPPTVDDADLFFWMSDTRVSDKKGTEVFP
DQVHPLHALWSMPRRYRLLFEDESGCCDLCGRECSRLVRRLRSKKQGANYDGPWRHPLTPYRRLNPKKTDELPLSSKGQP
GGLGYRHWPGLVLEDEASSGAMPARVVTHHLHKYRMVESARDDGEAFDAMFRHARLWVFGYDMDNMKPRGWYSVEMPLVG
VPEAHQEILRDWVKRFVDLASDVAWQVRNQLKRAWFKRPEDAKGDMSQIDAQFFEATQLAFFDVLRQMSETLRDYGDTPA
LSPEIHQKWHLTLKREALRLFDAQAISGPLEGMKMQQLERITSARRYLLAYLNGSGKKVQVFAQVGGFELKAPQSEGNRK
GNAA

Sequences:

>Translated_564_residues
MPMNLLTDPWLPFRRSDGSLLYRPPSALADPDILDLALPRADFQGAAWQFLIALLQTAMTPKNTDAWLDRYQTPPSVEEF
EAALAPFSRAFELDGEGPRFMQDLDPLEDVKDAPVAGLLIDSPGANGIKNNTDFFVKRGRVEAVCPDCAALALYTMQINA
PAGGAGIRVGLRGGGPLTTLILPEDETKSLWERLWPNVMPADAVGQPGQTWRPPTVDDADLFFWMSDTRVSDKKGTEVFP
DQVHPLHALWSMPRRYRLLFEDESGCCDLCGRECSRLVRRLRSKKQGANYDGPWRHPLTPYRRLNPKKTDELPLSSKGQP
GGLGYRHWPGLVLEDEASSGAMPARVVTHHLHKYRMVESARDDGEAFDAMFRHARLWVFGYDMDNMKPRGWYSVEMPLVG
VPEAHQEILRDWVKRFVDLASDVAWQVRNQLKRAWFKRPEDAKGDMSQIDAQFFEATQLAFFDVLRQMSETLRDYGDTPA
LSPEIHQKWHLTLKREALRLFDAQAISGPLEGMKMQQLERITSARRYLLAYLNGSGKKVQVFAQVGGFELKAPQSEGNRK
GNAA
>Mature_563_residues
PMNLLTDPWLPFRRSDGSLLYRPPSALADPDILDLALPRADFQGAAWQFLIALLQTAMTPKNTDAWLDRYQTPPSVEEFE
AALAPFSRAFELDGEGPRFMQDLDPLEDVKDAPVAGLLIDSPGANGIKNNTDFFVKRGRVEAVCPDCAALALYTMQINAP
AGGAGIRVGLRGGGPLTTLILPEDETKSLWERLWPNVMPADAVGQPGQTWRPPTVDDADLFFWMSDTRVSDKKGTEVFPD
QVHPLHALWSMPRRYRLLFEDESGCCDLCGRECSRLVRRLRSKKQGANYDGPWRHPLTPYRRLNPKKTDELPLSSKGQPG
GLGYRHWPGLVLEDEASSGAMPARVVTHHLHKYRMVESARDDGEAFDAMFRHARLWVFGYDMDNMKPRGWYSVEMPLVGV
PEAHQEILRDWVKRFVDLASDVAWQVRNQLKRAWFKRPEDAKGDMSQIDAQFFEATQLAFFDVLRQMSETLRDYGDTPAL
SPEIHQKWHLTLKREALRLFDAQAISGPLEGMKMQQLERITSARRYLLAYLNGSGKKVQVFAQVGGFELKAPQSEGNRKG
NAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789118, Length=310, Percent_Identity=27.4193548387097, Blast_Score=92, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013381 [H]

Pfam domain/function: PF09481 CRISPR_Cse1 [H]

EC number: NA

Molecular weight: Translated: 63650; Mature: 63519

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMNLLTDPWLPFRRSDGSLLYRPPSALADPDILDLALPRADFQGAAWQFLIALLQTAMT
CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCC
PKNTDAWLDRYQTPPSVEEFEAALAPFSRAFELDGEGPRFMQDLDPLEDVKDAPVAGLLI
CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCCHHHHHCCHHHHHCCCCEEEEEE
DSPGANGIKNNTDFFVKRGRVEAVCPDCAALALYTMQINAPAGGAGIRVGLRGGGPLTTL
ECCCCCCCCCCCHHEEECCCCEEECCCHHEEEEEEEEEECCCCCCEEEEEECCCCCEEEE
ILPEDETKSLWERLWPNVMPADAVGQPGQTWRPPTVDDADLFFWMSDTRVSDKKGTEVFP
EECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCC
DQVHPLHALWSMPRRYRLLFEDESGCCDLCGRECSRLVRRLRSKKQGANYDGPWRHPLTP
CCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
YRRLNPKKTDELPLSSKGQPGGLGYRHWPGLVLEDEASSGAMPARVVTHHLHKYRMVESA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
RDDGEAFDAMFRHARLWVFGYDMDNMKPRGWYSVEMPLVGVPEAHQEILRDWVKRFVDLA
CCCHHHHHHHHHHCEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
SDVAWQVRNQLKRAWFKRPEDAKGDMSQIDAQFFEATQLAFFDVLRQMSETLRDYGDTPA
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LSPEIHQKWHLTLKREALRLFDAQAISGPLEGMKMQQLERITSARRYLLAYLNGSGKKVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCEEE
VFAQVGGFELKAPQSEGNRKGNAA
EEEECCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
PMNLLTDPWLPFRRSDGSLLYRPPSALADPDILDLALPRADFQGAAWQFLIALLQTAMT
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCC
PKNTDAWLDRYQTPPSVEEFEAALAPFSRAFELDGEGPRFMQDLDPLEDVKDAPVAGLLI
CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCCHHHHHCCHHHHHCCCCEEEEEE
DSPGANGIKNNTDFFVKRGRVEAVCPDCAALALYTMQINAPAGGAGIRVGLRGGGPLTTL
ECCCCCCCCCCCHHEEECCCCEEECCCHHEEEEEEEEEECCCCCCEEEEEECCCCCEEEE
ILPEDETKSLWERLWPNVMPADAVGQPGQTWRPPTVDDADLFFWMSDTRVSDKKGTEVFP
EECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCC
DQVHPLHALWSMPRRYRLLFEDESGCCDLCGRECSRLVRRLRSKKQGANYDGPWRHPLTP
CCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
YRRLNPKKTDELPLSSKGQPGGLGYRHWPGLVLEDEASSGAMPARVVTHHLHKYRMVESA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
RDDGEAFDAMFRHARLWVFGYDMDNMKPRGWYSVEMPLVGVPEAHQEILRDWVKRFVDLA
CCCHHHHHHHHHHCEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
SDVAWQVRNQLKRAWFKRPEDAKGDMSQIDAQFFEATQLAFFDVLRQMSETLRDYGDTPA
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LSPEIHQKWHLTLKREALRLFDAQAISGPLEGMKMQQLERITSARRYLLAYLNGSGKKVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCEEE
VFAQVGGFELKAPQSEGNRKGNAA
EEEECCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]