| Definition | Chromohalobacter salexigens DSM 3043 chromosome, complete genome. |
|---|---|
| Accession | NC_007963 |
| Length | 3,696,649 |
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The map label for this gene is ygcB [H]
Identifier: 92112359
GI number: 92112359
Start: 253773
End: 256466
Strand: Direct
Name: ygcB [H]
Synonym: Csal_0224
Alternate gene names: 92112359
Gene position: 253773-256466 (Clockwise)
Preceding gene: 92112358
Following gene: 92112360
Centisome position: 6.86
GC content: 61.62
Gene sequence:
>2694_bases ATGTCGGCAGACAATGACGCGATTGCTTTTTATCACCGCTACGCGGGCAAGGCGATGCCGGGCCAGTCGGGAGACAGCTG CCACCTGTTGGCTTGGCACAGCCTTGATGTCGCGGCCGTCGGCTGGCATTTATTGGCCCCCGAGCGCCCACTGACGCAGC AGCTGGCGCTACGGCTTGGCATCGAGACGGAACCGCTGCGGCGACTGCTGGTATTTCTGCTCGGTTTGCATGATCTCGGC AAGTTCTCGCGTGCCTTTCAGGAAGTGCTGAAGTTGACACTCGAGGGTATGGCCAAGCCATTGGGTAAGCCTTATCTGGA GCGGCATGACCGTCTGGGTGTCTTGCTGTGGGATGCCTGGTGGCGCCAATGGCGTCGCGAGGGCGTGCTGCACTGGCCGC CCGATGATCAAACGCCTGCCAGAAAGCTGCTTGAGCCAATGGCTAGCCTGATGGCACCTTTTTTCGGTCACCACGGCCGG CCGGTCGTGACCGGTCGTTTAAACGTCGAAGCCTTTTACGGCAGCGATGCACAGGTCGATGACGTCACGGCGGCACGCGA TTTCATCGCGGACTGGGCCAAGGTGGTCGAACCGCATTGGCCGGTCGAACTGCTGCTTGACGAAGAGTGGCTAGACGTTT TCAGGACATTGAGCTGGACCATCGCCGGTTGGGCGACATTGAGCGATTGGCTGGGCTCCCATCGCGAGTACTTTCCATAT TGCGAGCGGGCGATGTCACTGTCCGAATACTGGTCTCGTGCGCTCGGCCAGGCCGAATCGGTGCTGCAAGCCACCGGCTT TGCCGCGTCCCCCGATCCCGTCCCCTACGAGAGTTTGGCGCAGTGGTTCAGCGCCGACATTACCCCGACGCCATTGCAGC AGAAGGCGGAGGCGATATCACTCGAGGCGGGGCCGCAGCTGTTCATCCTCGAAGACGTCACTGGCGCGGGGAAGACCGAA GCGGCCTGCATCCTGGCGCAACGCCTCTTGGCCGCTGGACATGGCGAAGGGCTCTACTTCGCGTTACCGACCATGGCGAC ATCGAACGCCATGTATGCCCGCCTGGGGGATCTCCATTACCGCTTTTACAGTGCAGAATCGCGTCCGTCTTTCGTGCTGG CGCACGGCGCTCGCCAGTTGAACGAGGATTTCGAGCGTGCCGTCATGGCTGCTCAGCCCGGTGACAACGATTACGCCGCC ATCGACGCCAGCGCCTCGACGCAGTGCAGTCGCTGGCTCGCCGACTCCAACAAGAAGGCCCTGTTGGCCGATGTCGGTGT CGGTACAATCGATCAGGCACTGATGGGGCTTTTGCCGTTTCGGCACCAGTCGCTGCGGCTCCTGGGGCTGGCGCGCAAGG TATTGATCGTCGATGAGGTACACGCCTTCGACCACTACATGCAGACACTTCTGCACCAACTGCTTGCACATCACGCCCGT CAGGGGGGAAGCGCGATCCTGCTGACCGCGACGCTACCTTTTGCGATGCGTCAGGCCCTCGTCAACGCCTGGCAGCAAGG ACTCGGGTATGAGTCGGCAGCACTGAGCAGTACCGACTATCCGCTGCTGACACATAGCGGTCAGGGCGCTCATCGCGAGA CGCCACTGGCAACCCGCCCCGAGGTGATGAGGCGAGTCGAGATTGGCTGGTTGACCCAAGAGGAAGACGCGATCGCAGAG GTGTCGCGGGGGATCGAAGCGGGCGACTGCATCGTCTGGGTGCGCAATACGGTCGATGATGCCATCCGTGCCTGGCAGGC CATTCGTGATATCCACTCCGATCCCGAGCGCTGTCTGCTGTTCCATGCCCGCTTTGCCATGGTGGACCGACGCCGCATCG AGTCCGATGTGATCGAACGTTTCGGCAAGACGTCGACGCCTTCTATACGCCGAGGCCAGGTGCTGATCACCACCCAGGTT TTTCAGGAGAGCCTCGACTGCGACGCCGACCGAATGATCAGCGACATCGCCCCGATCGATCTGCTAATACAGCGCGCCGG CCGGTTGCAGCGGCACCAGCGTGGTGAGCGTCAGCCACCGAGGCTTCTGGTGCTGGCACCCGAGTGGGAAGAGTCTCCCA AAGCGGATTGGCTCAGTCGGGCTCATCGCGGTACGCAGGCGGTGTATCAAGACACCTCGTTGATCTGGCTGACGCAACGC GTGCTGCGGGAACTGGGCGCCATCGAGATGCCAGACGCTGCGCGCGAGCTGATCGAACGGGTCTATGCCTGTTCCATCGA CGAGATTCCCGAGGCACTGGAGCAGGCTCGTCTGGAACGCAGTGGCATGAACAAGATGGTGGGATCGATGGCGACTCACA ATACGCTCGATCTGCAAGACGGCTATCGGCTCAACGAGGACTTCGATCAATGGCAGGAAGAGCGCGATGTGGGCACGCGG CTGAGCGACGAGTCGAGTGTCAACGTGGTGCTGCTCAAGCGTCAGGATGATTCGCTGGTGCTGTGGGCCGATGGAGAGCA TCACGCCGATATGCTGAGCCAGTGCCGGCTGCGAGAAAGCCAGGTGAGGAAGTTGGCCGAGTTGCCCGAACGCGATGCCG AAAGTTGGGAGGCCTTGCAGGAGCGCTACAAGGCGTTGCGGTTTACCCGGCCCTGGCTGCCCGAGGAAGATGACGATTGC CGCTACGATAGCCAGTGGGGCGTGGAATTGGCTCGATCCGAGCAAAAGCGTTGA
Upstream 100 bases:
>100_bases GGATTCATCTCGCTTTATGGTCTTCCAAGTAAAGGACGGCCTGGTCGGTGCGAACCCAATCAATGGGTTTCGTTACCGGT CCCCATCGAAGGAGCTGAGT
Downstream 100 bases:
>100_bases TTGTTGCGGGTTATGAAACTGGCGGTGATGTGATCTTCGTGCTACATAATAGCTTAATATGTAGCATGAAGGTGTCATAT GGCAACTCCTCACAACCCGC
Product: CRISPR-associated helicase Cas3 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 897; Mature: 896
Protein sequence:
>897_residues MSADNDAIAFYHRYAGKAMPGQSGDSCHLLAWHSLDVAAVGWHLLAPERPLTQQLALRLGIETEPLRRLLVFLLGLHDLG KFSRAFQEVLKLTLEGMAKPLGKPYLERHDRLGVLLWDAWWRQWRREGVLHWPPDDQTPARKLLEPMASLMAPFFGHHGR PVVTGRLNVEAFYGSDAQVDDVTAARDFIADWAKVVEPHWPVELLLDEEWLDVFRTLSWTIAGWATLSDWLGSHREYFPY CERAMSLSEYWSRALGQAESVLQATGFAASPDPVPYESLAQWFSADITPTPLQQKAEAISLEAGPQLFILEDVTGAGKTE AACILAQRLLAAGHGEGLYFALPTMATSNAMYARLGDLHYRFYSAESRPSFVLAHGARQLNEDFERAVMAAQPGDNDYAA IDASASTQCSRWLADSNKKALLADVGVGTIDQALMGLLPFRHQSLRLLGLARKVLIVDEVHAFDHYMQTLLHQLLAHHAR QGGSAILLTATLPFAMRQALVNAWQQGLGYESAALSSTDYPLLTHSGQGAHRETPLATRPEVMRRVEIGWLTQEEDAIAE VSRGIEAGDCIVWVRNTVDDAIRAWQAIRDIHSDPERCLLFHARFAMVDRRRIESDVIERFGKTSTPSIRRGQVLITTQV FQESLDCDADRMISDIAPIDLLIQRAGRLQRHQRGERQPPRLLVLAPEWEESPKADWLSRAHRGTQAVYQDTSLIWLTQR VLRELGAIEMPDAARELIERVYACSIDEIPEALEQARLERSGMNKMVGSMATHNTLDLQDGYRLNEDFDQWQEERDVGTR LSDESSVNVVLLKRQDDSLVLWADGEHHADMLSQCRLRESQVRKLAELPERDAESWEALQERYKALRFTRPWLPEEDDDC RYDSQWGVELARSEQKR
Sequences:
>Translated_897_residues MSADNDAIAFYHRYAGKAMPGQSGDSCHLLAWHSLDVAAVGWHLLAPERPLTQQLALRLGIETEPLRRLLVFLLGLHDLG KFSRAFQEVLKLTLEGMAKPLGKPYLERHDRLGVLLWDAWWRQWRREGVLHWPPDDQTPARKLLEPMASLMAPFFGHHGR PVVTGRLNVEAFYGSDAQVDDVTAARDFIADWAKVVEPHWPVELLLDEEWLDVFRTLSWTIAGWATLSDWLGSHREYFPY CERAMSLSEYWSRALGQAESVLQATGFAASPDPVPYESLAQWFSADITPTPLQQKAEAISLEAGPQLFILEDVTGAGKTE AACILAQRLLAAGHGEGLYFALPTMATSNAMYARLGDLHYRFYSAESRPSFVLAHGARQLNEDFERAVMAAQPGDNDYAA IDASASTQCSRWLADSNKKALLADVGVGTIDQALMGLLPFRHQSLRLLGLARKVLIVDEVHAFDHYMQTLLHQLLAHHAR QGGSAILLTATLPFAMRQALVNAWQQGLGYESAALSSTDYPLLTHSGQGAHRETPLATRPEVMRRVEIGWLTQEEDAIAE VSRGIEAGDCIVWVRNTVDDAIRAWQAIRDIHSDPERCLLFHARFAMVDRRRIESDVIERFGKTSTPSIRRGQVLITTQV FQESLDCDADRMISDIAPIDLLIQRAGRLQRHQRGERQPPRLLVLAPEWEESPKADWLSRAHRGTQAVYQDTSLIWLTQR VLRELGAIEMPDAARELIERVYACSIDEIPEALEQARLERSGMNKMVGSMATHNTLDLQDGYRLNEDFDQWQEERDVGTR LSDESSVNVVLLKRQDDSLVLWADGEHHADMLSQCRLRESQVRKLAELPERDAESWEALQERYKALRFTRPWLPEEDDDC RYDSQWGVELARSEQKR >Mature_896_residues SADNDAIAFYHRYAGKAMPGQSGDSCHLLAWHSLDVAAVGWHLLAPERPLTQQLALRLGIETEPLRRLLVFLLGLHDLGK FSRAFQEVLKLTLEGMAKPLGKPYLERHDRLGVLLWDAWWRQWRREGVLHWPPDDQTPARKLLEPMASLMAPFFGHHGRP VVTGRLNVEAFYGSDAQVDDVTAARDFIADWAKVVEPHWPVELLLDEEWLDVFRTLSWTIAGWATLSDWLGSHREYFPYC ERAMSLSEYWSRALGQAESVLQATGFAASPDPVPYESLAQWFSADITPTPLQQKAEAISLEAGPQLFILEDVTGAGKTEA ACILAQRLLAAGHGEGLYFALPTMATSNAMYARLGDLHYRFYSAESRPSFVLAHGARQLNEDFERAVMAAQPGDNDYAAI DASASTQCSRWLADSNKKALLADVGVGTIDQALMGLLPFRHQSLRLLGLARKVLIVDEVHAFDHYMQTLLHQLLAHHARQ GGSAILLTATLPFAMRQALVNAWQQGLGYESAALSSTDYPLLTHSGQGAHRETPLATRPEVMRRVEIGWLTQEEDAIAEV SRGIEAGDCIVWVRNTVDDAIRAWQAIRDIHSDPERCLLFHARFAMVDRRRIESDVIERFGKTSTPSIRRGQVLITTQVF QESLDCDADRMISDIAPIDLLIQRAGRLQRHQRGERQPPRLLVLAPEWEESPKADWLSRAHRGTQAVYQDTSLIWLTQRV LRELGAIEMPDAARELIERVYACSIDEIPEALEQARLERSGMNKMVGSMATHNTLDLQDGYRLNEDFDQWQEERDVGTRL SDESSVNVVLLKRQDDSLVLWADGEHHADMLSQCRLRESQVRKLAELPERDAESWEALQERYKALRFTRPWLPEEDDDCR YDSQWGVELARSEQKR
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=780, Percent_Identity=30.6410256410256, Blast_Score=274, Evalue=2e-74,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006483 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 101498; Mature: 101367
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSADNDAIAFYHRYAGKAMPGQSGDSCHLLAWHSLDVAAVGWHLLAPERPLTQQLALRLG CCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHCEEEECCCCCHHHHHHHHHC IETEPLRRLLVFLLGLHDLGKFSRAFQEVLKLTLEGMAKPLGKPYLERHDRLGVLLWDAW CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEHHHH WRQWRREGVLHWPPDDQTPARKLLEPMASLMAPFFGHHGRPVVTGRLNVEAFYGSDAQVD HHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCH DVTAARDFIADWAKVVEPHWPVELLLDEEWLDVFRTLSWTIAGWATLSDWLGSHREYFPY HHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH CERAMSLSEYWSRALGQAESVLQATGFAASPDPVPYESLAQWFSADITPTPLQQKAEAIS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHEE LEAGPQLFILEDVTGAGKTEAACILAQRLLAAGHGEGLYFALPTMATSNAMYARLGDLHY ECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHE RFYSAESRPSFVLAHGARQLNEDFERAVMAAQPGDNDYAAIDASASTQCSRWLADSNKKA EEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCCCCE LLADVGVGTIDQALMGLLPFRHQSLRLLGLARKVLIVDEVHAFDHYMQTLLHQLLAHHAR EEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QGGSAILLTATLPFAMRQALVNAWQQGLGYESAALSSTDYPLLTHSGQGAHRETPLATRP CCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCH EVMRRVEIGWLTQEEDAIAEVSRGIEAGDCIVWVRNTVDDAIRAWQAIRDIHSDPERCLL HHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHH FHARFAMVDRRRIESDVIERFGKTSTPSIRRGQVLITTQVFQESLDCDADRMISDIAPID HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHCCHHH LLIQRAGRLQRHQRGERQPPRLLVLAPEWEESPKADWLSRAHRGTQAVYQDTSLIWLTQR HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHH VLRELGAIEMPDAARELIERVYACSIDEIPEALEQARLERSGMNKMVGSMATHNTLDLQD HHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC GYRLNEDFDQWQEERDVGTRLSDESSVNVVLLKRQDDSLVLWADGEHHADMLSQCRLRES CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHH QVRKLAELPERDAESWEALQERYKALRFTRPWLPEEDDDCRYDSQWGVELARSEQKR HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure SADNDAIAFYHRYAGKAMPGQSGDSCHLLAWHSLDVAAVGWHLLAPERPLTQQLALRLG CCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHCEEEECCCCCHHHHHHHHHC IETEPLRRLLVFLLGLHDLGKFSRAFQEVLKLTLEGMAKPLGKPYLERHDRLGVLLWDAW CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEHHHH WRQWRREGVLHWPPDDQTPARKLLEPMASLMAPFFGHHGRPVVTGRLNVEAFYGSDAQVD HHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCH DVTAARDFIADWAKVVEPHWPVELLLDEEWLDVFRTLSWTIAGWATLSDWLGSHREYFPY HHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH CERAMSLSEYWSRALGQAESVLQATGFAASPDPVPYESLAQWFSADITPTPLQQKAEAIS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHEE LEAGPQLFILEDVTGAGKTEAACILAQRLLAAGHGEGLYFALPTMATSNAMYARLGDLHY ECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHE RFYSAESRPSFVLAHGARQLNEDFERAVMAAQPGDNDYAAIDASASTQCSRWLADSNKKA EEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCCCCE LLADVGVGTIDQALMGLLPFRHQSLRLLGLARKVLIVDEVHAFDHYMQTLLHQLLAHHAR EEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QGGSAILLTATLPFAMRQALVNAWQQGLGYESAALSSTDYPLLTHSGQGAHRETPLATRP CCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCH EVMRRVEIGWLTQEEDAIAEVSRGIEAGDCIVWVRNTVDDAIRAWQAIRDIHSDPERCLL HHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHH FHARFAMVDRRRIESDVIERFGKTSTPSIRRGQVLITTQVFQESLDCDADRMISDIAPID HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHCCHHH LLIQRAGRLQRHQRGERQPPRLLVLAPEWEESPKADWLSRAHRGTQAVYQDTSLIWLTQR HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHH VLRELGAIEMPDAARELIERVYACSIDEIPEALEQARLERSGMNKMVGSMATHNTLDLQD HHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC GYRLNEDFDQWQEERDVGTRLSDESSVNVVLLKRQDDSLVLWADGEHHADMLSQCRLRES CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHH QVRKLAELPERDAESWEALQERYKALRFTRPWLPEEDDDCRYDSQWGVELARSEQKR HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 2005873; 7984428 [H]