Click here to switch to the map view.

The map label for this gene is ydfH [C]

Identifier: 92112204

GI number: 92112204

Start: 87977

End: 88720

Strand: Direct

Name: ydfH [C]

Synonym: Csal_0069

Alternate gene names: 92112204

Gene position: 87977-88720 (Clockwise)

Preceding gene: 92112203

Following gene: 92112209

Centisome position: 2.38

GC content: 67.88

Gene sequence:

>744_bases
ATGAGCGAGTCACGTCAGGCGCATGCCGCCAAGAAAACGCGTCGCAACGAGGGCAAGGCCGGCGACGGTGCGCAGCGTCA
TGACGCCATCTATCGTGCGATCAGTGACGCCATCATCGAACATCGCCTGCAGCCCGGTGCGCGTCTGCGCGAGGATGCCC
TGTCGGACGTCTTCGGTGTCAGCCGCACCGGCATCCGCAAGATCCTGCAACGCCTGGCCCTGGAGCATCTCGTCACCTTG
ACGCCACGTCGCGGCGCGAGCGTCTCGCGGCCGACCGCCGAGGAAGCGCGCGATGTCTTCGCCGCGCGGCAACTGGTCGA
GTGCGGACTGATGGAGCAGGTCGTGCAGCGGGCCACGGCTGCGGATGTGGCGCGGCTGCGCGACGACGCGCGCCGCGAGC
GTCAGGCACTCAAGGCCGGCAAGCAGAGCGAGGCGATCAAGCTGTCGGCGGCCTTCCATGTGCGTCTGGCCGAGCTGGCG
GGCAACGCCACGCTCAGCGAATTCGTCGGCCGGTTATGCTCGCGCTCGTCGCTGATCCTGGCGGTTTACGGCAACACCGG
CCACCTCGGTTGCGAGTCGCACGACCACGACGAACTGATTCGCCACCTCGAAAGCGGCAACGGCGAGCGTGCCCGCGCCT
TCATGCAGCGCCACCTCAAGGCCATCGAAGCCTCGCTCTCCATTGCCGAGGCGCCCGAGGAAACCCCGGACCTGAAGCGG
ATCTTCGACGGCGCGCTCGGCTGA

Upstream 100 bases:

>100_bases
TCCCGCTGTTGCTGTCCCCCTTCGGTTATTCCACCTACCGCGGTAGCTGATGTCGGGCGGGCAATGCGATGATCAGCGCA
AATGCATTCGGGAGCCGTGA

Downstream 100 bases:

>100_bases
TGCCCCGCCGTCGCCGGCGGGACATTCAAGATACCGTACGCCTTCATGGCACTCCCGACAGGGCGGTGGACACGTCGTGC
CCGCGCATCAGGGCGAGATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator Protein GntR Family; GntR-Family Transcriptional Regulator; GntR Family Regulatory Protein; GntR Family Transcription Regulator Protein; Transcriptional Regulator Gntr Family; Transcription Regulator Protein; FCD Domain Protein; GntR Domain-Containing Protein; GntR Family Regulatory; Transcriptional Regulator GntR Family Protein; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family; Transcriptional Regulatory Protein GntR Family; Bacterial Regulatory Protein; GntR Family Transcription Regulator; GntR-Family Protein Transcriptional Regulator

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSESRQAHAAKKTRRNEGKAGDGAQRHDAIYRAISDAIIEHRLQPGARLREDALSDVFGVSRTGIRKILQRLALEHLVTL
TPRRGASVSRPTAEEARDVFAARQLVECGLMEQVVQRATAADVARLRDDARRERQALKAGKQSEAIKLSAAFHVRLAELA
GNATLSEFVGRLCSRSSLILAVYGNTGHLGCESHDHDELIRHLESGNGERARAFMQRHLKAIEASLSIAEAPEETPDLKR
IFDGALG

Sequences:

>Translated_247_residues
MSESRQAHAAKKTRRNEGKAGDGAQRHDAIYRAISDAIIEHRLQPGARLREDALSDVFGVSRTGIRKILQRLALEHLVTL
TPRRGASVSRPTAEEARDVFAARQLVECGLMEQVVQRATAADVARLRDDARRERQALKAGKQSEAIKLSAAFHVRLAELA
GNATLSEFVGRLCSRSSLILAVYGNTGHLGCESHDHDELIRHLESGNGERARAFMQRHLKAIEASLSIAEAPEETPDLKR
IFDGALG
>Mature_246_residues
SESRQAHAAKKTRRNEGKAGDGAQRHDAIYRAISDAIIEHRLQPGARLREDALSDVFGVSRTGIRKILQRLALEHLVTLT
PRRGASVSRPTAEEARDVFAARQLVECGLMEQVVQRATAADVARLRDDARRERQALKAGKQSEAIKLSAAFHVRLAELAG
NATLSEFVGRLCSRSSLILAVYGNTGHLGCESHDHDELIRHLESGNGERARAFMQRHLKAIEASLSIAEAPEETPDLKRI
FDGALG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27109; Mature: 26978

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESRQAHAAKKTRRNEGKAGDGAQRHDAIYRAISDAIIEHRLQPGARLREDALSDVFGV
CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
SRTGIRKILQRLALEHLVTLTPRRGASVSRPTAEEARDVFAARQLVECGLMEQVVQRATA
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADVARLRDDARRERQALKAGKQSEAIKLSAAFHVRLAELAGNATLSEFVGRLCSRSSLIL
HHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE
AVYGNTGHLGCESHDHDELIRHLESGNGERARAFMQRHLKAIEASLSIAEAPEETPDLKR
EEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IFDGALG
HHHHCCC
>Mature Secondary Structure 
SESRQAHAAKKTRRNEGKAGDGAQRHDAIYRAISDAIIEHRLQPGARLREDALSDVFGV
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
SRTGIRKILQRLALEHLVTLTPRRGASVSRPTAEEARDVFAARQLVECGLMEQVVQRATA
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADVARLRDDARRERQALKAGKQSEAIKLSAAFHVRLAELAGNATLSEFVGRLCSRSSLIL
HHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE
AVYGNTGHLGCESHDHDELIRHLESGNGERARAFMQRHLKAIEASLSIAEAPEETPDLKR
EEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IFDGALG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA