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The map label for this gene is secB

Identifier: 92112184

GI number: 92112184

Start: 57048

End: 57542

Strand: Direct

Name: secB

Synonym: Csal_0048

Alternate gene names: 92112184

Gene position: 57048-57542 (Clockwise)

Preceding gene: 92112183

Following gene: 92112185

Centisome position: 1.54

GC content: 61.01

Gene sequence:

>495_bases
ATGGCGGAAGACAACAATCAGGCCGCTCAGGGTGGCAACGACGCGCAGAACCAGTTGCAGTTCTCGATGCAGCGCATCTA
CGTCAAGGACATCTCCTTCGAGTCGCCCAACGCGCCGAGCGTGTTCCAGAACGCGTTCAAGCCCAAGGTCGGGCTCGACC
TCAACACCACCCACAAGCAGGTGGGTGAAAACCTCTACGAGGTGGTGGTCAAGGTGACGGCTCAGGTCACCAACAACGAA
GACGGCGCCACGGCATTCCTCGCCGAAGTGGAACAGGCCGGTCTGTTCCGCATCGCCGGCTTGAGCGACGACCAGCTCGA
CCACACCTTGGGCGCGTTCTGCCCCAACATGCTGTTCCCCTATGCGCGCGAGTGCATCGACAACCTGGTCAATCGTGGCA
GCTTCCCGCCACTGATGCTGTCGCCGGTCAATTTCGAGGGCATGTACGCGCAGAAGAAGAAGCGCGAGAGCGAAGCCGCC
GAGAACGCGCACTAA

Upstream 100 bases:

>100_bases
CCGACGAGCTGCCGGTGGTGCGCAAGTAATCGTTATCCCGACGGGGCGGTGCACGCCGGGCCCCGTGTCTCATGCATAGC
TCAGTCAAAGGAAGTACGAC

Downstream 100 bases:

>100_bases
GCGATGGCCGGACCGCGCATTCATGTGGCGGCCACGCTGGTCGCCGCAGCGGAGCTCACCCTGCCCGAAGGTGCCTCGCG
CCATGTGGCGGGCGCGCTAC

Product: protein translocase subunit secB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MAEDNNQAAQGGNDAQNQLQFSMQRIYVKDISFESPNAPSVFQNAFKPKVGLDLNTTHKQVGENLYEVVVKVTAQVTNNE
DGATAFLAEVEQAGLFRIAGLSDDQLDHTLGAFCPNMLFPYARECIDNLVNRGSFPPLMLSPVNFEGMYAQKKKRESEAA
ENAH

Sequences:

>Translated_164_residues
MAEDNNQAAQGGNDAQNQLQFSMQRIYVKDISFESPNAPSVFQNAFKPKVGLDLNTTHKQVGENLYEVVVKVTAQVTNNE
DGATAFLAEVEQAGLFRIAGLSDDQLDHTLGAFCPNMLFPYARECIDNLVNRGSFPPLMLSPVNFEGMYAQKKKRESEAA
ENAH
>Mature_163_residues
AEDNNQAAQGGNDAQNQLQFSMQRIYVKDISFESPNAPSVFQNAFKPKVGLDLNTTHKQVGENLYEVVVKVTAQVTNNED
GATAFLAEVEQAGLFRIAGLSDDQLDHTLGAFCPNMLFPYARECIDNLVNRGSFPPLMLSPVNFEGMYAQKKKRESEAAE
NAH

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=164, Percent_Identity=46.9512195121951, Blast_Score=166, Evalue=6e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_CHRSD (Q1R1J5)

Other databases:

- EMBL:   CP000285
- RefSeq:   YP_572112.1
- ProteinModelPortal:   Q1R1J5
- SMR:   Q1R1J5
- STRING:   Q1R1J5
- GeneID:   4027227
- GenomeReviews:   CP000285_GR
- KEGG:   csa:Csal_0048
- NMPDR:   fig|290398.4.peg.247
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- BioCyc:   CSAL290398:CSAL_0048-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18100; Mature: 17969

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEDNNQAAQGGNDAQNQLQFSMQRIYVKDISFESPNAPSVFQNAFKPKVGLDLNTTHKQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHH
VGENLYEVVVKVTAQVTNNEDGATAFLAEVEQAGLFRIAGLSDDQLDHTLGAFCPNMLFP
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHH
YARECIDNLVNRGSFPPLMLSPVNFEGMYAQKKKRESEAAENAH
HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AEDNNQAAQGGNDAQNQLQFSMQRIYVKDISFESPNAPSVFQNAFKPKVGLDLNTTHKQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHH
VGENLYEVVVKVTAQVTNNEDGATAFLAEVEQAGLFRIAGLSDDQLDHTLGAFCPNMLFP
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHH
YARECIDNLVNRGSFPPLMLSPVNFEGMYAQKKKRESEAAENAH
HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA