Click here to switch to the map view.

The map label for this gene is visC [H]

Identifier: 92112162

GI number: 92112162

Start: 31347

End: 32603

Strand: Direct

Name: visC [H]

Synonym: Csal_0026

Alternate gene names: 92112162

Gene position: 31347-32603 (Clockwise)

Preceding gene: 92112161

Following gene: 92112168

Centisome position: 0.85

GC content: 69.53

Gene sequence:

>1257_bases
ATGACGGCCGACGAGGAAACGAACATGGAAGAGACGACACACGACGAGGTGATCGTCGTCGGCGGCGGCATGGTCGGTGC
CGCGCTGGCGGCGCTGCTCGGCGAGGCCGGCATCTCGGTGACGGTACTCGATGCCCGTCCGGCGCCGCTGGCCAGCGACG
ATGTCGGTCGCGGCCTGCCCGCTCCTCGGGTCAGCGCCCTGACGCCGGTATCGCAGCGCTTGCTGACGCATCTGGGAGTC
TGGTCGTGGATGGCCGAGCGGCGTGTCTCGCCCTATCAGGGCATGCGCGTCTGGGACGGCGAAGGCAGCGGTGAAATCGC
CTTCGAGGCGGCGGACATCGGGCTGCGCGAGCTGGGCCATATCGTCGAGAACGACGTCGTCCTGGCGGGGCTCGAAGCAC
GCCTCGCCGCCCTGCCGAGCGTGACCCAGCGTTTCGGCGCGCGAGTGTCGGGGATCGAGCGCGAAGACGAGACGCAGACA
TTGACCCTCGACGATGGCAGCCGCTGGATGGCGCCGCTGGTGGTTGCCGCCGATGGCGCGCGCTCCCCGCTTCGCCGCCT
GGCGGGCATCGAGGTGCGCGAGCACGATACCGGCCATGTGGCGCTGGTCACCACGCTGCGCTGCGAGCAGGCCCACGGTG
GCGTGGCGCGTCAGGTCTTTTTGCCGGACGGGCCGTTGGCCTTTCTGCCCCTGCGGGTCGAGGAAGACGATCACCATTGC
TCGATCGTCTGGTCGACACGCCCCGAGCATGCTGAGCGGCTGCTGGCGCTGGACCCGGCGACATTCGCCGAGGCCTTGAA
TGCCGCCATGGAAGACCGGCTGGGCAAGATCGACGTGCTCGACGAAGTACACCACTTCCCGCTGACCCAGCGTCATGCCC
ACGATTACACCGCCCCCGGGCTGGCCCTGATCGGCGACGCCGCGCACAGCATTCACCCGCTGGCCGGCCAGGGCGTCAAT
CTGGGCTTCCTGGATGCGGCGGTGCTGGCGGAGGAGATCGTCCACGCCCGGCAACGTGGCGTGGCGCTCGGCGATGCTCG
CACGCTGGCGCGTTACGCTCGGCGCCGGCGCGGCGACAACGCCGCCATGCTGGCGCTGATGGACGGCTTCCGCCTGCTGT
TCGGCGCCCGACACCCCGCATTACGATTGATACGTAACGTCGGTCTTTCCAGCACGCACCGCCTGATGCCCCTCAAGCGG
CTCTTGATCCGCCAAGCCGCCGGCGAGCGCGGCGAGCTGCCCGCCGTGTGTCGCTAG

Upstream 100 bases:

>100_bases
ATGCCGCCTTTTCCCACCTGCGTGCCGCGGGGCTGGTGGGACTCAATATCGTGAGCCCGCTGCGACGCACCCTGGCGCGC
CGCGCCATGGGGCTGGAGCG

Downstream 100 bases:

>100_bases
AGGGTTTCATGATGCGTCGACAGACGTGTGTTCTGACGTCGGGGTGTCAGTGTCGATGGCATGGCGCTTGATTCGGCGCA
TCAACCAGGACTGCGTGACG

Product: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MTADEETNMEETTHDEVIVVGGGMVGAALAALLGEAGISVTVLDARPAPLASDDVGRGLPAPRVSALTPVSQRLLTHLGV
WSWMAERRVSPYQGMRVWDGEGSGEIAFEAADIGLRELGHIVENDVVLAGLEARLAALPSVTQRFGARVSGIEREDETQT
LTLDDGSRWMAPLVVAADGARSPLRRLAGIEVREHDTGHVALVTTLRCEQAHGGVARQVFLPDGPLAFLPLRVEEDDHHC
SIVWSTRPEHAERLLALDPATFAEALNAAMEDRLGKIDVLDEVHHFPLTQRHAHDYTAPGLALIGDAAHSIHPLAGQGVN
LGFLDAAVLAEEIVHARQRGVALGDARTLARYARRRRGDNAAMLALMDGFRLLFGARHPALRLIRNVGLSSTHRLMPLKR
LLIRQAAGERGELPAVCR

Sequences:

>Translated_418_residues
MTADEETNMEETTHDEVIVVGGGMVGAALAALLGEAGISVTVLDARPAPLASDDVGRGLPAPRVSALTPVSQRLLTHLGV
WSWMAERRVSPYQGMRVWDGEGSGEIAFEAADIGLRELGHIVENDVVLAGLEARLAALPSVTQRFGARVSGIEREDETQT
LTLDDGSRWMAPLVVAADGARSPLRRLAGIEVREHDTGHVALVTTLRCEQAHGGVARQVFLPDGPLAFLPLRVEEDDHHC
SIVWSTRPEHAERLLALDPATFAEALNAAMEDRLGKIDVLDEVHHFPLTQRHAHDYTAPGLALIGDAAHSIHPLAGQGVN
LGFLDAAVLAEEIVHARQRGVALGDARTLARYARRRRGDNAAMLALMDGFRLLFGARHPALRLIRNVGLSSTHRLMPLKR
LLIRQAAGERGELPAVCR
>Mature_417_residues
TADEETNMEETTHDEVIVVGGGMVGAALAALLGEAGISVTVLDARPAPLASDDVGRGLPAPRVSALTPVSQRLLTHLGVW
SWMAERRVSPYQGMRVWDGEGSGEIAFEAADIGLRELGHIVENDVVLAGLEARLAALPSVTQRFGARVSGIEREDETQTL
TLDDGSRWMAPLVVAADGARSPLRRLAGIEVREHDTGHVALVTTLRCEQAHGGVARQVFLPDGPLAFLPLRVEEDDHHCS
IVWSTRPEHAERLLALDPATFAEALNAAMEDRLGKIDVLDEVHHFPLTQRHAHDYTAPGLALIGDAAHSIHPLAGQGVNL
GFLDAAVLAEEIVHARQRGVALGDARTLARYARRRRGDNAAMLALMDGFRLLFGARHPALRLIRNVGLSSTHRLMPLKRL
LIRQAAGERGELPAVCR

Specific function: Not yet known [H]

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiH/COQ6 family [H]

Homologues:

Organism=Homo sapiens, GI32967305, Length=395, Percent_Identity=32.6582278481013, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI32967307, Length=361, Percent_Identity=32.6869806094183, Blast_Score=162, Evalue=7e-40,
Organism=Escherichia coli, GI1789273, Length=404, Percent_Identity=45.2970297029703, Blast_Score=295, Evalue=5e-81,
Organism=Escherichia coli, GI1786883, Length=394, Percent_Identity=40.6091370558376, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI1789274, Length=396, Percent_Identity=32.5757575757576, Blast_Score=170, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI25146631, Length=447, Percent_Identity=29.9776286353468, Blast_Score=175, Evalue=4e-44,
Organism=Saccharomyces cerevisiae, GI6321694, Length=461, Percent_Identity=26.0303687635575, Blast_Score=125, Evalue=1e-29,
Organism=Drosophila melanogaster, GI19920760, Length=446, Percent_Identity=31.6143497757848, Blast_Score=191, Evalue=6e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042
- InterPro:   IPR018168
- InterPro:   IPR010971 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 45116; Mature: 44985

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS01304 UBIH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADEETNMEETTHDEVIVVGGGMVGAALAALLGEAGISVTVLDARPAPLASDDVGRGLP
CCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
APRVSALTPVSQRLLTHLGVWSWMAERRVSPYQGMRVWDGEGSGEIAFEAADIGLRELGH
CCCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEHHCCHHHHHH
IVENDVVLAGLEARLAALPSVTQRFGARVSGIEREDETQTLTLDDGSRWMAPLVVAADGA
HHHCCEEEECHHHHHHHHHHHHHHHCCHHCCCCCCCCCCEEEECCCCCEEEEEEEECCCC
RSPLRRLAGIEVREHDTGHVALVTTLRCEQAHGGVARQVFLPDGPLAFLPLRVEEDDHHC
HHHHHHHHCCEEEECCCCCEEEEEEEEHHHCCCCCEEEEECCCCCEEEEEEEECCCCCEE
SIVWSTRPEHAERLLALDPATFAEALNAAMEDRLGKIDVLDEVHHFPLTQRHAHDYTAPG
EEEECCCHHHHHHEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
LALIGDAAHSIHPLAGQGVNLGFLDAAVLAEEIVHARQRGVALGDARTLARYARRRRGDN
CEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
AAMLALMDGFRLLFGARHPALRLIRNVGLSSTHRLMPLKRLLIRQAAGERGELPAVCR
CEEHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TADEETNMEETTHDEVIVVGGGMVGAALAALLGEAGISVTVLDARPAPLASDDVGRGLP
CCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
APRVSALTPVSQRLLTHLGVWSWMAERRVSPYQGMRVWDGEGSGEIAFEAADIGLRELGH
CCCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEHHCCHHHHHH
IVENDVVLAGLEARLAALPSVTQRFGARVSGIEREDETQTLTLDDGSRWMAPLVVAADGA
HHHCCEEEECHHHHHHHHHHHHHHHCCHHCCCCCCCCCCEEEECCCCCEEEEEEEECCCC
RSPLRRLAGIEVREHDTGHVALVTTLRCEQAHGGVARQVFLPDGPLAFLPLRVEEDDHHC
HHHHHHHHCCEEEECCCCCEEEEEEEEHHHCCCCCEEEEECCCCCEEEEEEEECCCCCEE
SIVWSTRPEHAERLLALDPATFAEALNAAMEDRLGKIDVLDEVHHFPLTQRHAHDYTAPG
EEEECCCHHHHHHEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
LALIGDAAHSIHPLAGQGVNLGFLDAAVLAEEIVHARQRGVALGDARTLARYARRRRGDN
CEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
AAMLALMDGFRLLFGARHPALRLIRNVGLSSTHRLMPLKRLLIRQAAGERGELPAVCR
CEEHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With NADH2 or NADPH2 as one donor, and incorporation of one atom of oxygen [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1339425; 9278503 [H]