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The map label for this gene is xerD [H]

Identifier: 92109697

GI number: 92109697

Start: 31165

End: 32238

Strand: Reverse

Name: xerD [H]

Synonym: Nham_4576

Alternate gene names: 92109697

Gene position: 32238-31165 (Counterclockwise)

Preceding gene: 92109698

Following gene: 92109691

Centisome position: 26.55

GC content: 68.9

Gene sequence:

>1074_bases
ATGAACAATCTCTCTCCCGGCAGCGACAGCCTTCTCGTCCCTTCGCAGGCCGTGCGAGAGCCGGGCGACGCTCCCTCCCC
TCCTCTACCCGCCCACCTCGAGCAGCTCGCCGATCGCGCCCGCGGCTATGTCGAGGCCGCGAGCTCGGCCAACACCCGCC
GCGCCTACGCCTCCGACTGGAAGCATTTTTCGGCCTGGTGCCGGCGCCAGGGCCTCGAGGTCTTGCCGCCCTCGGCCCAG
ACGGTCGGGCTCTACATTACCGCCTGCGCCTCGGGCACGGCGACCGCCGATCACCAGCCGAATTCGGTCGCGACGATCGA
ACGCCGGCTCTCGGCCCTGACCTGGACCTATGCCCAGCGCGGCACGCCGCTCGATCGCGCGGATCGGCACATCGCGACCG
TGCTCGCCGGCATCCGCAACACCCACGCCGCCCCGCCCCGGCAGAAGGAAGCGGTTCTCCCGGAAGACGTCATCGCCATG
CTGGAAACGCTCGATCGCGGCACCCTGCGGGGATTACGCGACCGCGCCATGCTGCTGATCGGCTTCGCAGGAGCCCTGCG
CCGCTCGGAAATCGTCGGCCTCGATGTTGATCGCGACGACACCGAGGACGGCCGTGGCTGGGTCGAGATCCTCGACAAGG
GCATGATCGTCACCCTGCGCGGCAAAACCGGCTGGCGCGAGGTCGAAATCGGCCGTGGCTCCTCCGACGCCACCTGCCCC
GTTATCGCGCTGCAGACCTGGCTGAAACTGGCCAAGATCGGCCATGGGCCGCTGTTCCGCCGCGTCATCGGCCAGGGCAA
GGACGTCGGGCCAGATCGCCTGACCGATCGGCAGGTCGCTCGTCTGGTGAAATGCGCGGCGTTGGCGGCCGGTGTCCGGG
GCGATCTCCCCGAAGGCGAACGCGAGGAGAAATTCGCCGGCCATTCGCTGCGCGCCGGCCTCGCCTCCTCGGCCGAGGTC
GACGAGCGCTATGTCCAAAAGCAGCTCGGCCACGCCAGCGCCGAAATGACCCGCCGCTATCAGCGCCGCCGCGACCGGTT
TCGGGTCAATTTGACCAAAGCGGCCGGACTTTGA

Upstream 100 bases:

>100_bases
TCGGCGACTGCTTTTCCTATGCCCTGGCCGCCCTCAGCGGTGAACCCCTGCTGTACAAGGGCAACGACTTTTCGCAGACC
GACATCAAGGCGGCCTGACG

Downstream 100 bases:

>100_bases
CCCGTCAGAAGTCCCACGGCGACATCAGCTCGAGCCCTGTCGAAGCAAAATCACTCCGATTCCGCGTGGCCAAGCGACCG
CCGTTGACGCGGGCGATGGC

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MNNLSPGSDSLLVPSQAVREPGDAPSPPLPAHLEQLADRARGYVEAASSANTRRAYASDWKHFSAWCRRQGLEVLPPSAQ
TVGLYITACASGTATADHQPNSVATIERRLSALTWTYAQRGTPLDRADRHIATVLAGIRNTHAAPPRQKEAVLPEDVIAM
LETLDRGTLRGLRDRAMLLIGFAGALRRSEIVGLDVDRDDTEDGRGWVEILDKGMIVTLRGKTGWREVEIGRGSSDATCP
VIALQTWLKLAKIGHGPLFRRVIGQGKDVGPDRLTDRQVARLVKCAALAAGVRGDLPEGEREEKFAGHSLRAGLASSAEV
DERYVQKQLGHASAEMTRRYQRRRDRFRVNLTKAAGL

Sequences:

>Translated_357_residues
MNNLSPGSDSLLVPSQAVREPGDAPSPPLPAHLEQLADRARGYVEAASSANTRRAYASDWKHFSAWCRRQGLEVLPPSAQ
TVGLYITACASGTATADHQPNSVATIERRLSALTWTYAQRGTPLDRADRHIATVLAGIRNTHAAPPRQKEAVLPEDVIAM
LETLDRGTLRGLRDRAMLLIGFAGALRRSEIVGLDVDRDDTEDGRGWVEILDKGMIVTLRGKTGWREVEIGRGSSDATCP
VIALQTWLKLAKIGHGPLFRRVIGQGKDVGPDRLTDRQVARLVKCAALAAGVRGDLPEGEREEKFAGHSLRAGLASSAEV
DERYVQKQLGHASAEMTRRYQRRRDRFRVNLTKAAGL
>Mature_357_residues
MNNLSPGSDSLLVPSQAVREPGDAPSPPLPAHLEQLADRARGYVEAASSANTRRAYASDWKHFSAWCRRQGLEVLPPSAQ
TVGLYITACASGTATADHQPNSVATIERRLSALTWTYAQRGTPLDRADRHIATVLAGIRNTHAAPPRQKEAVLPEDVIAM
LETLDRGTLRGLRDRAMLLIGFAGALRRSEIVGLDVDRDDTEDGRGWVEILDKGMIVTLRGKTGWREVEIGRGSSDATCP
VIALQTWLKLAKIGHGPLFRRVIGQGKDVGPDRLTDRQVARLVKCAALAAGVRGDLPEGEREEKFAGHSLRAGLASSAEV
DERYVQKQLGHASAEMTRRYQRRRDRFRVNLTKAAGL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38985; Mature: 38985

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLSPGSDSLLVPSQAVREPGDAPSPPLPAHLEQLADRARGYVEAASSANTRRAYASDW
CCCCCCCCCCEECCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
KHFSAWCRRQGLEVLPPSAQTVGLYITACASGTATADHQPNSVATIERRLSALTWTYAQR
HHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
GTPLDRADRHIATVLAGIRNTHAAPPRQKEAVLPEDVIAMLETLDRGTLRGLRDRAMLLI
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFAGALRRSEIVGLDVDRDDTEDGRGWVEILDKGMIVTLRGKTGWREVEIGRGSSDATCP
HHHHHHHHCCEEEECCCCCCCCCCCHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCCCH
VIALQTWLKLAKIGHGPLFRRVIGQGKDVGPDRLTDRQVARLVKCAALAAGVRGDLPEGE
HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
REEKFAGHSLRAGLASSAEVDERYVQKQLGHASAEMTRRYQRRRDRFRVNLTKAAGL
HHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEHHHCCC
>Mature Secondary Structure
MNNLSPGSDSLLVPSQAVREPGDAPSPPLPAHLEQLADRARGYVEAASSANTRRAYASDW
CCCCCCCCCCEECCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
KHFSAWCRRQGLEVLPPSAQTVGLYITACASGTATADHQPNSVATIERRLSALTWTYAQR
HHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
GTPLDRADRHIATVLAGIRNTHAAPPRQKEAVLPEDVIAMLETLDRGTLRGLRDRAMLLI
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFAGALRRSEIVGLDVDRDDTEDGRGWVEILDKGMIVTLRGKTGWREVEIGRGSSDATCP
HHHHHHHHCCEEEECCCCCCCCCCCHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCCCH
VIALQTWLKLAKIGHGPLFRRVIGQGKDVGPDRLTDRQVARLVKCAALAAGVRGDLPEGE
HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
REEKFAGHSLRAGLASSAEVDERYVQKQLGHASAEMTRRYQRRRDRFRVNLTKAAGL
HHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]